{"id":"W4283580204","doi":"10.3389/fmicb.2022.859990","title":"Genomic Characterization of Enterococcus hirae From Beef Cattle Feedlots and Associated Environmental Continuum","year":2022,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Lethbridge; Calgary Laboratory Services; Alberta Health Services; Agriculture and Agri-Food Canada; University of Calgary","funders":"Beef Cattle Research Council; Government of Canada; Government of Alberta","keywords":"Enterococcus hirae; Biology; Beef cattle; Tetracycline; Microbiology; Nitrofurantoin; Antibiotic resistance; Enterococcus; Antibiotics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002472001,0.000346313,0.0003452511,0.001133196,0.0003087581,0.0006559004,0.000195565,0.0002967991,0.0005671895],"category_scores_gemma":[0.000673211,0.0001531091,0.0003903902,0.001570003,0.0001812348,0.0001562513,0.0003820178,0.0002710665,0.0002894734],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002528414,"about_ca_system_score_gemma":0.0002890785,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01019549,"about_ca_topic_score_gemma":0.01012071,"domain_scores_codex":[0.9995844,0.00003814674,0.00004158479,0.000121493,0.0001228131,0.00009158923],"domain_scores_gemma":[0.999499,0.00008634198,0.0001595587,0.00002845764,0.000147432,0.00007930837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005927079,0.0002362486,0.2030421,0.0002665404,0.0000623005,0.0008000088,0.001361226,0.0002117053,0.774972,0.00008685517,0.0002275563,0.01814072],"study_design_scores_gemma":[0.00001129517,0.0004155717,0.9700581,0.00003691009,0.00006441661,0.00167549,0.001825619,0.000373086,0.02312895,0.00002628649,0.00237299,0.00001119527],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952642,0.0003311007,0.000575232,0.00003984077,0.000007135764,0.00004168915,0.003099455,0.000008615046,0.0006328454],"genre_scores_gemma":[0.9838796,0.0004583472,0.002206953,0.0001234988,0.00001914824,0.00004628008,0.01209918,0.00001332387,0.001153693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01019549,"threshold_uncertainty_score":0.02027231,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005205774109987452,"score_gpt":0.1985919334198152,"score_spread":0.1933861593098277,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}