{"id":"W4283587392","doi":"10.1186/s12864-022-08663-w","title":"Comparative genomics analysis and virulence-related factors in novel Aliarcobacter faecis and Aliarcobacter lanthieri species identified as potential opportunistic pathogens","year":2022,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; University of Prince Edward Island; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Biology; Virulence; Genomics; Comparative genomics; Proteomics; DNA microarray; Computational biology; Genetics; Genome; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002077287,0.0004194397,0.0004231072,0.0009814958,0.0002790715,0.0004674332,0.0002159616,0.0003773398,0.000669869],"category_scores_gemma":[0.0004501383,0.0001097955,0.0006291794,0.001298347,0.0001542193,0.0002521696,0.0003452777,0.0003201215,0.0002432577],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003190156,"about_ca_system_score_gemma":0.0003314439,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00240542,"about_ca_topic_score_gemma":0.002010287,"domain_scores_codex":[0.9997141,0.00002683027,0.00003719675,0.00009186392,0.0000626098,0.00006748744],"domain_scores_gemma":[0.9996475,0.00005660188,0.0001154361,0.00002289286,0.0001043343,0.00005310074],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005959657,0.0001815901,0.0191663,0.000337581,0.00005553773,0.0004396865,0.0004292473,0.0002503582,0.9709594,0.00006235849,0.0001271374,0.007394834],"study_design_scores_gemma":[0.00005720184,0.001996631,0.7640502,0.000126278,0.0004600137,0.00561733,0.003109445,0.003727941,0.2087449,0.0002069371,0.01183834,0.00006480211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955019,0.000652753,0.0007053172,0.00005773744,0.000009941976,0.00002819367,0.002410752,0.00001946121,0.0006138014],"genre_scores_gemma":[0.9817028,0.0007000162,0.005579008,0.0001087835,0.00001543133,0.00007557991,0.01085689,0.00002723766,0.0009342256],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00240542,"threshold_uncertainty_score":0.004782796,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02671769946903933,"score_gpt":0.24325113319372,"score_spread":0.2165334337246807,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}