{"id":"W4283699345","doi":"10.1093/molbev/msac138","title":"Neofunctionalization of a Noncoding Portion of a DNA Transposon in the Coding Region of the Chimerical Sex-Determining Gene <i>dm-W</i> in <i>Xenopus</i> Frogs","year":2022,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Neofunctionalization; Noncoding DNA; Transposable element; Xenopus; Genetics; Gene; Gene duplication; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003085963,0.000074045,0.0001410367,0.00004927532,0.00006587639,0.000001641745,0.0001231917,0.00008019528,0.000004077474],"category_scores_gemma":[0.00004020978,0.00005629183,0.00006864947,0.0001722652,0.0001552844,0.000003829171,0.00006030874,0.00009094127,3.548812e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001153766,"about_ca_system_score_gemma":0.00003548618,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005592507,"about_ca_topic_score_gemma":0.00001901373,"domain_scores_codex":[0.9990196,0.0002683875,0.0003521738,0.0001610371,0.00009968484,0.00009917052],"domain_scores_gemma":[0.9996155,0.00002375683,0.0001939794,0.0001250162,0.00003072504,0.00001105001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001319797,0.0001242965,0.1132834,0.00003430271,0.00001347099,0.000002215804,0.0004530656,0.000621073,0.8828917,0.001530505,0.000007571382,0.0009064787],"study_design_scores_gemma":[0.002448606,0.001965699,0.4228395,0.00009080675,0.00007084347,0.0001756067,0.00396892,0.002062639,0.5619993,0.003694046,0.000384667,0.0002993481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946674,0.0004508381,0.004414306,0.0001522876,0.00006219433,0.0001354621,0.00001133978,0.000001610003,0.000104529],"genre_scores_gemma":[0.999608,0.00006959662,0.0000647535,0.0001494149,0.00001614167,0.0000207465,0.00005112046,0.000004292895,0.000015948],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3208924,"threshold_uncertainty_score":0.2295514,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00896973348393732,"score_gpt":0.2440094937520627,"score_spread":0.2350397602681254,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}