{"id":"W4283703462","doi":"10.1038/s41396-022-01270-3","title":"Priority effects shape the structure of infant-type <i>Bifidobacterium</i> communities on human milk oligosaccharides","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Diabetes and Digestive and Kidney Diseases; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Lady Davis Fellowship Trust, Hebrew University of Jerusalem; Science Foundation Ireland; U.S. Department of Health and Human Services","keywords":"Biology; Bifidobacterium; Bifidobacterium bifidum; Bifidobacterium breve; Bifidobacterium longum; Infant formula; Dominance (genetics); Gut flora; Food science; Microbiology; Immunology; Lactobacillus; Genetics; Fermentation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004015935,0.0001212605,0.0001468686,0.00002881896,0.001122189,0.00003473122,0.0006036099,0.00005323903,0.000167829],"category_scores_gemma":[0.00001720306,0.00007034055,0.00008591722,0.00007423108,0.000123757,0.00000299949,0.0002727649,0.0006768531,0.000001324959],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002277237,"about_ca_system_score_gemma":0.0001143198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000988355,"about_ca_topic_score_gemma":0.00009074348,"domain_scores_codex":[0.9989021,0.0004440133,0.0002070689,0.00008129442,0.0001616783,0.0002038185],"domain_scores_gemma":[0.9992569,0.00004607744,0.0001995407,0.0003901192,0.00006598361,0.00004136295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009442417,0.00003530582,0.001464531,0.00002302878,0.00005411175,0.000001454687,0.001056897,0.00006536322,0.9926955,0.0001271866,0.004080386,0.0003017758],"study_design_scores_gemma":[0.001806444,0.004027943,0.1428182,0.00008862551,0.0001448256,0.001214076,0.003752439,0.00003848296,0.7610661,0.001807726,0.08276282,0.0004723454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978618,0.0006105166,0.000002945071,0.0008089276,0.0004091618,0.0001478081,0.00004508407,0.000004007071,0.0001097601],"genre_scores_gemma":[0.9975491,0.0001924931,0.00002283245,0.001805763,0.0002820433,0.000001467127,0.00003274093,0.00001397024,0.00009965929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2316295,"threshold_uncertainty_score":0.8631086,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01553643243209666,"score_gpt":0.2771984398114095,"score_spread":0.2616620073793128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}