{"id":"W4283703462","doi":"10.1038/s41396-022-01270-3","title":"Priority effects shape the structure of infant-type <i>Bifidobacterium</i> communities on human milk oligosaccharides","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Diabetes and Digestive and Kidney Diseases; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Lady Davis Fellowship Trust, Hebrew University of Jerusalem; Science Foundation Ireland; U.S. Department of Health and Human Services","keywords":"Biology; Bifidobacterium; Bifidobacterium bifidum; Bifidobacterium breve; Bifidobacterium longum; Infant formula; Dominance (genetics); Gut flora; Food science; Microbiology; Immunology; Lactobacillus; Genetics; Fermentation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002971553,0.0002549828,0.0003378955,0.0003435603,0.0003116442,0.0009247044,0.0002207023,0.000409407,0.00105671],"category_scores_gemma":[0.0007336844,0.0002777065,0.0003108321,0.0002550193,0.0002919885,0.0003945147,0.0006824814,0.0003652493,0.0003818967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003521909,"about_ca_system_score_gemma":0.0003421579,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003454068,"about_ca_topic_score_gemma":0.003963262,"domain_scores_codex":[0.9997044,0.00004782596,0.00001223375,0.00009276869,0.00004722223,0.00009551889],"domain_scores_gemma":[0.9997283,0.0000453477,0.00008024694,0.00002268214,0.00006384551,0.00005956841],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002932774,0.00005320506,0.05476533,0.00008773436,0.00005490915,0.00009002829,0.0003038261,0.0008425062,0.9335715,0.0004620581,0.0002948504,0.009180902],"study_design_scores_gemma":[0.00002578896,0.0006058842,0.8433248,0.00007003485,0.0001252726,0.0002986561,0.001586513,0.01368266,0.1336823,0.001265332,0.005262309,0.00007025749],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973979,0.0003229338,0.001145267,0.00004472301,0.000006489853,0.000007432852,0.0001957727,0.00003189072,0.0008474902],"genre_scores_gemma":[0.9977774,0.000217913,0.001170648,0.00008502611,0.00000365749,0.00001014758,0.0003269383,0.00002075088,0.0003874206],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003454068,"threshold_uncertainty_score":0.006867886,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01553643243209666,"score_gpt":0.2771984398114095,"score_spread":0.2616620073793128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}