{"id":"W4283722976","doi":"10.3390/microorganisms10071312","title":"Phylogenomic Analyses and Molecular Signatures Elucidating the Evolutionary Relationships amongst the Chlorobia and Ignavibacteria Species: Robust Demarcation of Two Family-Level Clades within the Order Chlorobiales and Proposal for the Family Chloroherpetonaceae fam. nov","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Research, Innovation and Science","keywords":"Clade; Biology; Monophyly; Candidatus; Evolutionary biology; Phylogenomics; Phylogenetic tree; Phylogenetics; Indel; Genetics; Genome; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001983738,0.0003013607,0.000271036,0.001537498,0.0002975108,0.0003772117,0.0001679737,0.0002831309,0.0006208192],"category_scores_gemma":[0.0003728184,0.0001170019,0.0004018858,0.0008961897,0.0002680204,0.0002029647,0.0003814568,0.0003125002,0.0002208014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002377169,"about_ca_system_score_gemma":0.0002884923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001476646,"about_ca_topic_score_gemma":0.001596515,"domain_scores_codex":[0.9998392,0.00001887254,0.00001049001,0.00005494033,0.00003155505,0.00004484886],"domain_scores_gemma":[0.9997417,0.00005092835,0.00007585843,0.0000228905,0.00004404658,0.00006437283],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000676507,0.00007182891,0.155172,0.0001575047,0.00009999608,0.0002395099,0.0005156911,0.0004693993,0.8225086,0.0001699423,0.00008368869,0.01983522],"study_design_scores_gemma":[0.00001353414,0.0002102405,0.9651546,0.00001847848,0.000097367,0.000775957,0.0005307783,0.003394874,0.02755419,0.0002107542,0.00202291,0.00001635902],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976259,0.0002730981,0.0009576357,0.00003275645,0.000001778151,0.00001400024,0.000651661,0.00002060775,0.0004225891],"genre_scores_gemma":[0.9925467,0.000248172,0.003551214,0.00003775399,0.000004018506,0.00002102206,0.0032559,0.00001190056,0.0003232929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001537498,"threshold_uncertainty_score":0.002936125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04315563137276097,"score_gpt":0.2586880286443712,"score_spread":0.2155323972716102,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}