{"id":"W4283727583","doi":"10.1128/spectrum.00784-22","title":"Genotypic and Phenotypic Diversity of the Replication-Competent HIV Reservoir in Treated Patients","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Agence Nationale de Recherches sur le Sida et les Hépatites Virales","keywords":"Viremia; Biology; Viral replication; Viral load; Genotype; Genome; Virology; Phenotype; Infectivity; Virus; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002106481,0.0001232157,0.0002210699,0.0001180168,0.0005582859,0.000002504438,0.0003817571,0.00008131823,0.0007190688],"category_scores_gemma":[0.00003361977,0.00009148023,0.00006177092,0.0002323901,0.0003157359,0.00002140612,0.001301618,0.0003198423,0.00009335997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001667098,"about_ca_system_score_gemma":0.00004358581,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005887222,"about_ca_topic_score_gemma":0.0003981933,"domain_scores_codex":[0.998552,0.0004888261,0.000217808,0.0003774922,0.00002488378,0.0003390409],"domain_scores_gemma":[0.9992759,0.00007541371,0.0001046423,0.0005043372,0.00002342912,0.00001628456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002721225,0.000378487,0.8862721,0.00000621379,0.000104228,0.000002723587,0.0004255392,0.000009370579,0.1102032,0.0002819017,0.001796151,0.0002479165],"study_design_scores_gemma":[0.002907026,0.0003530653,0.9531144,0.000005482932,0.00002374853,0.00002867556,0.0001265197,0.000001141118,0.03032633,0.0002712346,0.01273053,0.0001118611],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996469,0.0009020625,0.000001233674,0.001131452,0.0001331452,0.0004628119,0.0005430314,0.0000168216,0.0003404738],"genre_scores_gemma":[0.9977566,0.00002635825,0.000009004693,0.00008505474,0.00000379035,0.00003930026,0.0005614863,0.000007013813,0.001511363],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07987686,"threshold_uncertainty_score":0.7873299,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01071317191734744,"score_gpt":0.2112958003297628,"score_spread":0.2005826284124154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}