{"id":"W4283727583","doi":"10.1128/spectrum.00784-22","title":"Genotypic and Phenotypic Diversity of the Replication-Competent HIV Reservoir in Treated Patients","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Agence Nationale de Recherches sur le Sida et les Hépatites Virales","keywords":"Viremia; Biology; Viral replication; Viral load; Genotype; Genome; Virology; Phenotype; Infectivity; Virus; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001719741,0.0001352074,0.0003026567,0.0004423374,0.0003537344,0.0006312754,0.0001421862,0.0003268789,0.0008901826],"category_scores_gemma":[0.001602333,0.0001425351,0.0001168973,0.0002380832,0.0002583496,0.0002824827,0.0002104251,0.0003945286,0.00009727083],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002212537,"about_ca_system_score_gemma":0.0001035016,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004677478,"about_ca_topic_score_gemma":0.0003470024,"domain_scores_codex":[0.9997916,0.00007098553,0.00001780268,0.00004174067,0.00003225454,0.0000456136],"domain_scores_gemma":[0.9995396,0.0001739154,0.0001161742,0.00003748466,0.00003446586,0.00009840383],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001586983,0.0002402478,0.9436663,0.0000341751,0.00006291149,0.002359188,0.001157974,0.0004575798,0.03577744,0.0001863531,0.0001436495,0.0143272],"study_design_scores_gemma":[0.00003806266,0.001574609,0.9827952,0.00001585005,0.00006872711,0.006616233,0.0009531978,0.001392994,0.005704985,0.0002326716,0.0005839576,0.00002360017],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999642,0.00008709283,0.00005540462,0.00001026487,8.189232e-7,0.00000281242,0.00002426874,0.000001642165,0.0001756326],"genre_scores_gemma":[0.9998611,0.00002328071,0.00004049443,0.000007719929,0.00000208915,0.00000198257,0.0000232202,9.447202e-7,0.00003901824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008901826,"threshold_uncertainty_score":0.002978027,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01071317191734744,"score_gpt":0.2112958003297628,"score_spread":0.2005826284124154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}