{"id":"W4283764307","doi":"10.1177/09564624221109686","title":"Vaginal microbiota associated with oncogenic HPV in a cohort of HPV-vaccinated women living with HIV","year":2022,"lang":"en","type":"article","venue":"International Journal of STD & AIDS","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University; AIDS Vancouver; St. Michael's Hospital; McGill University Health Centre; Université Laval; Université de Montréal; University of Saskatchewan; McMaster University; Toronto General Hospital; University of Toronto; University Health Network; HIV Legal Network; Women's Health Research Institute; Women's College Hospital; Public Health Ontario; University of British Columbia","funders":"Canadian Institutes of Health Research; Canadian HIV Trials Network, Canadian Institutes of Health Research; Merck","keywords":"Medicine; HPV infection; Microbiome; Population; Prevotella; Coinfection; Bacterial vaginosis; Cervical cancer; Cohort; Poisson regression; Immunology; Logistic regression; Internal medicine; Cancer; Gynecology; Human immunodeficiency virus (HIV); Biology; Genetics; Environmental health","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001396386,0.0001314142,0.0001758197,0.0003786769,0.0007381028,0.0004759015,0.0001875668,0.0002561815,0.001331705],"category_scores_gemma":[0.0008897977,0.0002167543,0.0001260386,0.0004753615,0.0002320123,0.0002007869,0.0003712143,0.000314488,0.0001053932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003310321,"about_ca_system_score_gemma":0.000440877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03409357,"about_ca_topic_score_gemma":0.03356856,"domain_scores_codex":[0.9998977,0.00001563132,0.000005867511,0.00002803208,0.00002075353,0.00003201746],"domain_scores_gemma":[0.999796,0.00003030275,0.00006562126,0.00001474558,0.00003529251,0.00005808689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004446312,0.00001593111,0.9986988,0.000004390554,0.000007484406,0.00004299849,0.0001987832,0.00000591581,0.00028663,0.000004598111,0.0000307893,0.0006590405],"study_design_scores_gemma":[0.000002670418,0.00007078084,0.9985576,0.000005380947,0.000008937921,0.0002212299,0.0009295927,0.00005731018,0.0000439674,0.00001154407,0.00008959568,0.000001290569],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997465,0.00005250066,0.00001133815,0.00001062671,0.000001070619,0.000004633213,0.00008404132,5.238377e-7,0.00008875677],"genre_scores_gemma":[0.9997099,0.00005012365,0.0000343586,0.00001156359,0.000001339236,0.000004735867,0.0001021375,5.768597e-7,0.00008536125],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03409357,"threshold_uncertainty_score":0.06779021,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01105522226918554,"score_gpt":0.2923032420362908,"score_spread":0.2812480197671052,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}