{"id":"W4283807002","doi":"10.1101/2022.07.04.498725","title":"Phylogenomic analysis of the Neocallimastigomycota: Proposal of <i>Caecomycetaceae</i> fam. nov., <i>Piromycetaceae</i> fam. nov., and emended description of the families <i>Neocallimastigaceae and Anaeromycetaceae</i>","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"","keywords":"Biology; Phylogenomics; Clade; Genus; Phylogenetic tree; Evolutionary biology; Zoology; Phylogenetics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000499071,0.0005524958,0.0004673754,0.002005892,0.0006291527,0.001042726,0.000171277,0.0002856329,0.0009674333],"category_scores_gemma":[0.0007039316,0.000162681,0.0006148448,0.002109301,0.0002743744,0.000392573,0.000613573,0.0004561785,0.0003731404],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003155235,"about_ca_system_score_gemma":0.000400591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001624849,"about_ca_topic_score_gemma":0.001790415,"domain_scores_codex":[0.9997088,0.00004618008,0.00002177649,0.0001116888,0.00005090492,0.0000605754],"domain_scores_gemma":[0.9996457,0.00008023879,0.0000871893,0.00004287126,0.00008355514,0.00006037549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007673873,0.0001076247,0.2329078,0.0003915256,0.0002194071,0.0002435813,0.0004384789,0.002402217,0.7169437,0.0004779113,0.0004707634,0.04462967],"study_design_scores_gemma":[0.00002632559,0.0002382629,0.9187204,0.0001119347,0.0002407953,0.0004788553,0.000957516,0.02161304,0.04789038,0.0008866743,0.008798312,0.00003753343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884031,0.001053909,0.00413877,0.00008198713,0.000009180577,0.00003591175,0.004641443,0.00008824872,0.001547389],"genre_scores_gemma":[0.9834545,0.0005404549,0.007179584,0.0000702362,0.00001048018,0.00006061232,0.008171373,0.00005378965,0.0004590078],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002005892,"threshold_uncertainty_score":0.003236413,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008960908884272768,"score_gpt":0.1923336436609769,"score_spread":0.1833727347767042,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}