{"id":"W4284886473","doi":"10.1038/s41467-022-31487-x","title":"Population genomics of ancient and modern Trichuris trichiura","year":2022,"lang":"en","type":"article","venue":"Nature Communications","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"Bijzonder Onderzoeksfonds UGent; Shanxi Agricultural University; UK Research and Innovation; Wellcome Trust","keywords":"Trichuris trichiura; Trichuris; Genomics; Trichuriasis; Population genomics; Biology; Population; Genetics; Evolutionary biology; Computational biology; Medicine; Helminths; Zoology; Genome; Environmental health; Gene; Ascaris lumbricoides","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000257835,0.0001290865,0.0001549615,0.0005502483,0.000276918,0.0003428299,0.0001438125,0.0002529766,0.0008132922],"category_scores_gemma":[0.0004720222,0.0001073056,0.0001515954,0.0005521125,0.0003084783,0.0001619022,0.000354386,0.0002740714,0.00009043833],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001915635,"about_ca_system_score_gemma":0.0001117453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001897165,"about_ca_topic_score_gemma":0.002974608,"domain_scores_codex":[0.9998723,0.00003484102,0.000004303947,0.00004753228,0.00001742831,0.00002358858],"domain_scores_gemma":[0.9998677,0.00003221657,0.00003775726,0.00001511301,0.00002289495,0.00002434382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006021314,0.0001010585,0.4951891,0.0001581311,0.000454533,0.0005563927,0.006610708,0.001709108,0.4156555,0.003063608,0.0005390799,0.07536066],"study_design_scores_gemma":[0.000006378976,0.0000943874,0.9955606,0.00001037017,0.00003047799,0.0003017232,0.0004933524,0.000499111,0.001121405,0.0004396584,0.00143482,0.000007531842],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998952,0.0001401902,0.0003955734,0.00002432602,0.00000120329,0.000001613741,0.0001213048,0.000003976829,0.0003598788],"genre_scores_gemma":[0.9988852,0.0001449151,0.0004434796,0.000028726,0.000003681123,0.00000442045,0.0002569986,0.00000434621,0.0002281698],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001897165,"threshold_uncertainty_score":0.003772199,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01745109957907664,"score_gpt":0.3249941077994867,"score_spread":0.30754300822041,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}