{"id":"W4284886473","doi":"10.1038/s41467-022-31487-x","title":"Population genomics of ancient and modern Trichuris trichiura","year":2022,"lang":"en","type":"article","venue":"Nature Communications","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"Bijzonder Onderzoeksfonds UGent; Shanxi Agricultural University; UK Research and Innovation; Wellcome Trust","keywords":"Trichuris trichiura; Trichuris; Genomics; Trichuriasis; Population genomics; Biology; Population; Genetics; Evolutionary biology; Computational biology; Medicine; Helminths; Zoology; Genome; Environmental health; Gene; Ascaris lumbricoides","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001472439,0.00004291471,0.00006564821,0.00004265222,0.0004442225,0.000003849536,0.0003478064,0.00005352966,0.0001914205],"category_scores_gemma":[0.00003320108,0.00004389361,0.00002479197,0.0002093416,0.0000790559,0.00005902795,0.0005079362,0.0004001644,0.00000743813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001086556,"about_ca_system_score_gemma":0.000005945082,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001234029,"about_ca_topic_score_gemma":0.0001796811,"domain_scores_codex":[0.9995411,0.0001025852,0.0001189393,0.00009600188,0.00007612206,0.00006522668],"domain_scores_gemma":[0.999297,0.0001053521,0.00008392681,0.0004839936,0.000006291632,0.00002341278],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004583568,0.0004475833,0.9188775,0.000002261483,0.00003004496,3.945489e-7,0.001431128,0.002497311,0.03483225,0.006159957,0.004604828,0.03107088],"study_design_scores_gemma":[0.0001058511,0.00002755672,0.8638298,5.627875e-7,0.00001288079,0.00001008785,0.00006726941,0.005578951,0.00008134063,0.0004949804,0.1297345,0.00005622286],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9895444,0.002138981,0.00007990864,0.0009405517,0.0000883403,0.0001228325,0.00005540014,0.00001589427,0.007013698],"genre_scores_gemma":[0.9970807,0.000132055,0.002103333,0.0003278243,0.000004505222,0.0000282192,0.00008695339,0.000003446038,0.0002329614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1251297,"threshold_uncertainty_score":0.3416645,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01745109957907664,"score_gpt":0.3249941077994867,"score_spread":0.30754300822041,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}