{"id":"W4285007109","doi":"10.3390/microorganisms10071381","title":"Analysis of Microbiota Persistence in Quebec’s Terroir Cheese Using a Metabarcoding Approach","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; AgreenSkills; Novalait; Université Laval","keywords":"Biology; Terroir; Microbiome; Microbial ecology; Persistence (discontinuity); Pyrosequencing; 16S ribosomal RNA; Amplicon sequencing; Biodiversity; Ecology; Food science; Genetics; Bacteria; Gene; Wine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003293568,0.0001589991,0.000341349,0.0003355175,0.0001513266,0.00001661849,0.0003241779,0.00007850605,0.0001249855],"category_scores_gemma":[0.00001202638,0.000176382,0.0002077,0.0009283713,0.00007323776,0.000004307457,0.0003533389,0.0001618006,0.000001199849],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001254796,"about_ca_system_score_gemma":0.0001886753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002649367,"about_ca_topic_score_gemma":0.001736971,"domain_scores_codex":[0.9986756,0.0001358367,0.0003294906,0.0004453922,0.00009768799,0.0003159435],"domain_scores_gemma":[0.9993919,0.000004257467,0.0001473931,0.0003674512,0.00003699063,0.00005202818],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002931706,0.000159545,0.009780427,0.00002863673,0.0002325996,0.000002902789,0.0009079939,0.001246128,0.987469,0.0000100122,0.0000688264,0.00006463731],"study_design_scores_gemma":[0.0009699722,0.0001581142,0.06867998,0.00001099896,0.0006418272,0.00006828719,0.005735142,0.0009350966,0.9182465,0.000003029973,0.004025269,0.0005257761],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982378,0.0007830478,0.0004723821,0.00005302829,0.00005437632,0.0001661819,0.00009866872,0.000006394851,0.0001281229],"genre_scores_gemma":[0.995306,0.00001844804,0.003544732,0.0002209972,0.00002150715,0.000007450967,0.000279379,0.0000235927,0.0005779166],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06922247,"threshold_uncertainty_score":0.7192649,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02482330996890028,"score_gpt":0.252551677098761,"score_spread":0.2277283671298607,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}