{"id":"W4285007109","doi":"10.3390/microorganisms10071381","title":"Analysis of Microbiota Persistence in Quebec’s Terroir Cheese Using a Metabarcoding Approach","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; AgreenSkills; Novalait; Université Laval","keywords":"Biology; Terroir; Microbiome; Microbial ecology; Persistence (discontinuity); Pyrosequencing; 16S ribosomal RNA; Amplicon sequencing; Biodiversity; Ecology; Food science; Genetics; Bacteria; Gene; Wine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005003551,0.0003416163,0.0003287253,0.001389046,0.00113976,0.0008020847,0.0003654701,0.0003091249,0.001269291],"category_scores_gemma":[0.0005964522,0.0001473966,0.000322733,0.001586106,0.0002834858,0.0001727653,0.000310166,0.0002324706,0.0001626024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003657754,"about_ca_system_score_gemma":0.003056907,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8013969,"about_ca_topic_score_gemma":0.8800077,"domain_scores_codex":[0.9996352,0.00003033847,0.0000148169,0.0001412938,0.00009692898,0.00008149001],"domain_scores_gemma":[0.999542,0.00004695645,0.00007693264,0.00002029399,0.0002620777,0.00005177668],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007649036,0.0001275184,0.5637653,0.0002139602,0.0002952296,0.0006154345,0.001685467,0.00114505,0.3919524,0.0002394532,0.0008966441,0.03829852],"study_design_scores_gemma":[0.000004353105,0.0001080067,0.9918561,0.00001414076,0.00003783881,0.0001046515,0.000467032,0.0008370736,0.004920032,0.00001257853,0.001626739,0.00001144972],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952093,0.000518754,0.000866025,0.00004855968,0.000005407636,0.00004010545,0.001868231,0.00001844776,0.001425208],"genre_scores_gemma":[0.9910585,0.0003385647,0.002716757,0.00006573763,0.000003471278,0.0000413767,0.00332658,0.00001198389,0.002436938],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1986031,"threshold_uncertainty_score":0.3995454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02482330996890028,"score_gpt":0.252551677098761,"score_spread":0.2277283671298607,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}