{"id":"W4285028726","doi":"10.1186/s12284-022-00582-4","title":"Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions","year":2022,"lang":"en","type":"article","venue":"Rice","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Punjab Agricultural University","keywords":"Biology; Oryza rufipogon; Germplasm; Genome-wide association study; Single-nucleotide polymorphism; Genetic diversity; Population; Genotyping; Genetics; Genetic association; Phenotypic trait; Quantitative trait locus; Biotechnology; Allele; Genotype; Agronomy; Gene; Phenotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004244685,0.0002546175,0.0002841571,0.0007179911,0.0002329261,0.0002139245,0.0002149101,0.0002126109,0.0008816549],"category_scores_gemma":[0.0004244347,0.0001352996,0.0004029922,0.0008127069,0.0001332413,0.00006524986,0.0002146952,0.0002467099,0.0002179268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001033954,"about_ca_system_score_gemma":0.0001685643,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001176097,"about_ca_topic_score_gemma":0.002422994,"domain_scores_codex":[0.9997138,0.00004752475,0.00002576562,0.0001453341,0.00004232941,0.00002517926],"domain_scores_gemma":[0.999698,0.00007724063,0.0001178667,0.00004785938,0.00003056609,0.00002853541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001087741,0.000238604,0.303139,0.0001665414,0.0004780928,0.001022281,0.0007876301,0.0008995807,0.6519843,0.0003521619,0.0003391223,0.03950497],"study_design_scores_gemma":[0.00004107448,0.0001753493,0.9902204,0.00000866895,0.0001398076,0.0006181244,0.0000781792,0.0009263823,0.006319849,0.00007202048,0.001390128,0.000009975655],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965821,0.00009174054,0.001767528,0.0000156731,0.000003624881,0.00002913792,0.00125411,0.0000224467,0.0002337317],"genre_scores_gemma":[0.9865071,0.0001047126,0.007532242,0.00003564634,0.000007985956,0.00007705508,0.005049935,0.00001696064,0.0006683075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001176097,"threshold_uncertainty_score":0.002949357,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02020628132825567,"score_gpt":0.2494313365845143,"score_spread":0.2292250552562586,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}