{"id":"W4285156857","doi":"10.21769/bioprotoc.4452","title":"ATAC-Seq of a Single Myofiber from Mus musculus","year":2022,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"Chromatin; Myocyte; Biology; Epigenetics; Computational biology; Cell biology; Muscle disease; Genome; Genetics; Gene; Disease; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000425519,0.0006458003,0.0004809294,0.0009320359,0.0007388878,0.0004382989,0.0005598342,0.0009558389,0.0130872],"category_scores_gemma":[0.0003678295,0.0003681173,0.0006243534,0.0006174642,0.0002599487,0.0002822038,0.0004533687,0.001321874,0.005742308],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003548497,"about_ca_system_score_gemma":0.0006195956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002537161,"about_ca_topic_score_gemma":0.01004267,"domain_scores_codex":[0.9996685,0.00002012789,0.00001663884,0.0001487568,0.0001074919,0.0000384135],"domain_scores_gemma":[0.9998428,0.00004016852,0.00002360017,0.00002324598,0.00004826349,0.00002190794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000221231,0.00002914567,0.000919181,0.0008888487,0.0000826721,0.0002363224,0.0001299452,0.0007859937,0.9602727,0.0009711866,0.01875089,0.01671186],"study_design_scores_gemma":[0.0001408859,0.0003892522,0.03130816,0.0003274785,0.0002091017,0.001279705,0.0002122606,0.01243194,0.7698164,0.003001703,0.1807129,0.0001701724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"methods","genre_scores_codex":[0.2487177,0.006504205,0.2366287,0.003762968,0.002324627,0.001096949,0.4482538,0.01525981,0.03745127],"genre_scores_gemma":[0.2597646,0.004116291,0.3799349,0.005032292,0.0003011482,0.001999468,0.295689,0.004571964,0.04859028],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.0130872,"threshold_uncertainty_score":0.0437811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02123952583646553,"score_gpt":0.2884048821670843,"score_spread":0.2671653563306187,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}