{"id":"W4285156857","doi":"10.21769/bioprotoc.4452","title":"ATAC-Seq of a Single Myofiber from Mus musculus","year":2022,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"Chromatin; Myocyte; Biology; Epigenetics; Computational biology; Cell biology; Muscle disease; Genome; Genetics; Gene; Disease; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000932538,0.0001065585,0.0001095572,0.00002864758,0.0001122272,0.00001225034,0.0002516416,0.00005864618,0.0008708832],"category_scores_gemma":[0.00001386507,0.0001022105,0.00009676001,0.0001099871,0.00005500403,0.000002427727,0.0002103602,0.00006037463,0.00001170196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003017063,"about_ca_system_score_gemma":0.00008605633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001342175,"about_ca_topic_score_gemma":0.00001869108,"domain_scores_codex":[0.9991132,0.00006280251,0.0002124821,0.0002981581,0.0001635376,0.0001498193],"domain_scores_gemma":[0.9992576,0.000005176174,0.0001222438,0.0005155989,0.0000530386,0.00004633624],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001999102,0.0002646139,0.000952783,0.00001900889,0.00003702622,0.000001757253,0.00004784252,0.00004562071,0.9792631,0.00007274662,0.01099337,0.008102229],"study_design_scores_gemma":[0.0009695914,0.0003493826,0.002080942,0.000003941894,0.000007743317,0.000001990938,0.0000869549,0.00001878419,0.2559611,0.00007458516,0.7403132,0.0001318842],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.3360778,0.000106878,0.001251463,0.00038805,0.0003003084,0.646885,0.0007083648,0.00005363876,0.01422856],"genre_scores_gemma":[0.2101606,6.287789e-7,0.0005287941,0.0001523407,0.0001532864,0.7877191,0.000105015,0.00001936053,0.001160854],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.7293198,"threshold_uncertainty_score":0.953556,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02123952583646553,"score_gpt":0.2884048821670843,"score_spread":0.2671653563306187,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}