{"id":"W4285310709","doi":"10.1007/978-1-0716-2111-0_2","title":"Molecular Epidemiology of SARS-CoV-2 by Sequencing","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Molecular epidemiology; Coronavirus disease 2019 (COVID-19); Sars virus; Epidemiology; Biology; Computational biology; Virology; Medicine; Genetics; Internal medicine; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001228258,0.0004579511,0.0003637843,0.001590267,0.0002517872,0.0006559792,0.0002713085,0.000482899,0.001028275],"category_scores_gemma":[0.001687134,0.0002737705,0.0004143754,0.0008187076,0.0002717962,0.0003332321,0.0003838337,0.000466768,0.0004217198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003466673,"about_ca_system_score_gemma":0.0004658514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003619198,"about_ca_topic_score_gemma":0.002898019,"domain_scores_codex":[0.9989693,0.0003109304,0.0001148852,0.0002405392,0.0002383877,0.000125921],"domain_scores_gemma":[0.9987805,0.0002705548,0.0003438608,0.0001166283,0.0003672053,0.0001212061],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001023987,0.000177309,0.731231,0.0002995871,0.0001646816,0.0005469017,0.0012091,0.002335221,0.1960594,0.002270146,0.002096719,0.06258591],"study_design_scores_gemma":[0.00003822401,0.0007928108,0.9217819,0.0002341051,0.0001885089,0.003275821,0.001089806,0.007623965,0.0442986,0.002303918,0.01833592,0.00003625685],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9653491,0.002173275,0.02006465,0.0004426403,0.0001026936,0.0001882621,0.004714161,0.0001023343,0.006862864],"genre_scores_gemma":[0.9772366,0.001590889,0.01408926,0.0004902547,0.00009271863,0.00006425685,0.004669575,0.00004816302,0.001718211],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.003619198,"threshold_uncertainty_score":0.007196248,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1305482005368832,"score_gpt":0.5003872630059889,"score_spread":0.3698390624691058,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}