{"id":"W4285493277","doi":"10.1101/2022.07.13.22277603","title":"Genome evolution and early introductions of the SARS-CoV-2 Omicron Variant in Mexico","year":2022,"lang":"en","type":"preprint","venue":"medRxiv","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Genome; Lineage (genetic); Coronavirus disease 2019 (COVID-19); Biology; Fish <Actinopterygii>; Evolutionary biology; Genetics; Positive selection; Gene; Medicine; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001837646,0.0001527752,0.0001567556,0.000571921,0.0004035229,0.0004688572,0.000142666,0.0003314947,0.0008217675],"category_scores_gemma":[0.0004261451,0.0001206784,0.0002371132,0.0006568719,0.0001635774,0.0001638467,0.0002556264,0.0003352574,0.00007076137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006146166,"about_ca_system_score_gemma":0.0002232101,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01208218,"about_ca_topic_score_gemma":0.01357657,"domain_scores_codex":[0.9998976,0.00001240195,0.000004097163,0.00004555557,0.00001246644,0.00002782828],"domain_scores_gemma":[0.9997407,0.00003334218,0.0001510691,0.00001457418,0.00003490517,0.00002537541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005342132,0.00005439714,0.9681484,0.00005066074,0.00007712864,0.0008445031,0.000867636,0.0004005533,0.02167718,0.0001692824,0.0002319174,0.006944147],"study_design_scores_gemma":[0.000004591011,0.00005465665,0.9974552,0.00001291244,0.00002080694,0.0001839743,0.0004351103,0.0002138107,0.0005618808,0.00001728338,0.001035583,0.000004284609],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992393,0.0001014823,0.00007333325,0.00002087416,0.000002751654,0.000003824138,0.0003132909,0.000002899252,0.0002421559],"genre_scores_gemma":[0.9983399,0.0001810643,0.0003168242,0.00002131954,0.000005214245,0.000008840139,0.0009137028,0.00000327039,0.0002097898],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01208218,"threshold_uncertainty_score":0.02402371,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03827400749553192,"score_gpt":0.320480878513029,"score_spread":0.2822068710174971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}