{"id":"W4285591545","doi":"10.1097/qai.0000000000003061","title":"Lung and Plasma Metabolome in HIV-Associated Obstructive Lung Disease","year":2022,"lang":"en","type":"article","venue":"JAIDS Journal of Acquired Immune Deficiency Syndromes","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Heart, Lung, and Blood Institute","keywords":"Metabolome; Metabolite; Bronchoalveolar lavage; Metabolomics; False discovery rate; Lung; Lipidomics; Medicine; Internal medicine; Univariate analysis; Immunology; Gastroenterology; Biology; Chemistry; Chromatography; Bioinformatics; Multivariate analysis; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005854637,0.0003340925,0.0003141859,0.001104647,0.0003399404,0.0005529841,0.0002016567,0.000498925,0.001047418],"category_scores_gemma":[0.0009429411,0.0001602207,0.0002173827,0.0006825114,0.000228408,0.0002537223,0.0004802876,0.0002768927,0.0001432089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000224368,"about_ca_system_score_gemma":0.0001558723,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008795597,"about_ca_topic_score_gemma":0.001302071,"domain_scores_codex":[0.9997416,0.00006026151,0.0000210077,0.00008413145,0.00006239943,0.00003059024],"domain_scores_gemma":[0.9996771,0.00009163618,0.0001175925,0.00002796396,0.00004689683,0.00003873354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002695977,0.0001543084,0.8187585,0.0002465826,0.0003956164,0.0008451628,0.0002110441,0.0005946304,0.1466591,0.0001368963,0.0004143089,0.0288878],"study_design_scores_gemma":[0.0000311451,0.0005671994,0.975897,0.00004634,0.0001640785,0.001976301,0.0001627218,0.002368204,0.01738198,0.0004023815,0.0009872136,0.00001532538],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953845,0.00209408,0.001001126,0.00007652093,0.00001009517,0.00002207357,0.001029701,0.0000295673,0.0003522871],"genre_scores_gemma":[0.9965577,0.0004554619,0.001812588,0.00008976577,0.00001207522,0.00002136686,0.0008698236,0.00000601263,0.0001752623],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001104647,"threshold_uncertainty_score":0.003504038,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009641585079034206,"score_gpt":0.2467377799733713,"score_spread":0.2370961948943371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}