{"id":"W4285596705","doi":"10.3390/jof8070732","title":"Genomic Characteristics and Comparative Genomics Analysis of Parafenestella ontariensis sp. nov.","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"King Saud University","keywords":"Biology; Clade; Phylogenetic tree; Genomics; Phylogenetics; Taxon; Genome; Evolutionary biology; Host (biology); Taxonomy (biology); Extant taxon; Comparative genomics; Botany; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001793633,0.00009445816,0.0003524867,0.0001439012,0.00007044844,0.00001135366,0.0001263309,0.00003215689,0.00005788124],"category_scores_gemma":[0.00001303466,0.00008881842,0.0001945297,0.000142389,0.00003769393,0.000002780783,0.0001026887,0.00008845089,4.99991e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002505588,"about_ca_system_score_gemma":0.0001020194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008015653,"about_ca_topic_score_gemma":0.00001450656,"domain_scores_codex":[0.9992304,0.00006085122,0.0003551244,0.0001176598,0.0001292622,0.0001067355],"domain_scores_gemma":[0.9992465,0.00002673734,0.0004173794,0.0001247033,0.0001002357,0.00008448852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003700586,0.00009686041,0.09173089,0.00000775201,0.001078996,0.00003202981,0.0001402197,0.000930148,0.9046906,0.00002793776,0.0003255079,0.0005690077],"study_design_scores_gemma":[0.000535539,0.0007348401,0.9465522,0.000006562676,0.00205769,0.0002318597,0.0005101411,0.0008529443,0.01495294,0.00001021477,0.03332282,0.0002322106],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950635,0.003432111,0.0001225859,0.00001500325,0.0001004717,0.00004347881,0.001104339,8.626357e-7,0.0001175915],"genre_scores_gemma":[0.9984549,0.0007587318,0.0003944754,0.0001000695,0.0000784735,0.000001087216,0.0001459444,0.000005460663,0.00006091455],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8897377,"threshold_uncertainty_score":0.362191,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01937375212097022,"score_gpt":0.236891409898166,"score_spread":0.2175176577771958,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}