{"id":"W4285613396","doi":"10.3934/microbiol.2022022","title":"Evaluation of the use of CRISPR loci for discrimination of <i>Salmonella enterica</i> subsp. <i>enterica</i> serovar Enteritidis strains recovered in Canada and comparison with other subtyping methods","year":2022,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Subtyping; Biology; Salmonella enterica; CRISPR; Typing; Pulsed-field gel electrophoresis; Genetics; Virulence; Salmonella enteritidis; Serotype; Computational biology; Outbreak; Genome; Salmonella; Microbiology; Gene; Virology; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001977922,0.0003154233,0.0008886146,0.00007420096,0.0001684644,0.00001271887,0.0004751014,0.0001556715,0.0002044051],"category_scores_gemma":[0.0002613071,0.0001593808,0.0001752,0.0004932048,0.0003493666,0.000104342,0.0002662541,0.0001672742,3.810038e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003183436,"about_ca_system_score_gemma":0.0001689947,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.03066245,"about_ca_topic_score_gemma":0.4323744,"domain_scores_codex":[0.9949675,0.00266282,0.001027578,0.000610947,0.0002327169,0.0004984041],"domain_scores_gemma":[0.9974883,0.0009001807,0.0009895691,0.0002332966,0.0003193583,0.00006928034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003102655,0.000197114,0.03293696,0.0000446327,0.0001094122,6.576366e-7,0.0004333394,0.0003487201,0.9541345,0.0001732963,0.0008506113,0.01046048],"study_design_scores_gemma":[0.003063242,0.002981465,0.8209392,0.000218237,0.0005816858,0.000125344,0.001542224,0.004513815,0.08697056,0.0005471377,0.0775762,0.0009408217],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956933,0.0007858664,0.0004887031,0.0005440668,0.0002992251,0.0009368699,0.001176912,0.00001228031,0.00006272808],"genre_scores_gemma":[0.9977149,0.0001370616,0.0012077,0.0002765202,0.00003599972,0.0001138715,0.0004501728,0.00000827524,0.00005549063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.867164,"threshold_uncertainty_score":0.9757925,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07091557329923608,"score_gpt":0.2893168748356651,"score_spread":0.2184013015364291,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}