{"id":"W4285613396","doi":"10.3934/microbiol.2022022","title":"Evaluation of the use of CRISPR loci for discrimination of <i>Salmonella enterica</i> subsp. <i>enterica</i> serovar Enteritidis strains recovered in Canada and comparison with other subtyping methods","year":2022,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Subtyping; Biology; Salmonella enterica; CRISPR; Typing; Pulsed-field gel electrophoresis; Genetics; Virulence; Salmonella enteritidis; Serotype; Computational biology; Outbreak; Genome; Salmonella; Microbiology; Gene; Virology; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001139802,0.0005366177,0.0004801084,0.001062121,0.0004029413,0.000873672,0.0005536529,0.0005889115,0.0007763625],"category_scores_gemma":[0.001840214,0.000267482,0.0005326315,0.0008667627,0.0006014142,0.0002414392,0.0005194417,0.0003863633,0.000374315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006508891,"about_ca_system_score_gemma":0.0008282057,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02798852,"about_ca_topic_score_gemma":0.07461724,"domain_scores_codex":[0.9982717,0.000249632,0.0001266835,0.0004535802,0.0006906089,0.0002077874],"domain_scores_gemma":[0.9982514,0.0005384008,0.000279948,0.0001242775,0.0006282849,0.0001776974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009826713,0.0005535719,0.08695964,0.0002095627,0.0001143621,0.0001969346,0.0005531954,0.0005735009,0.8866981,0.00005990276,0.000151746,0.02294681],"study_design_scores_gemma":[0.00005994075,0.008612692,0.4683329,0.00004779126,0.0003584512,0.001125462,0.001522342,0.003313868,0.5133855,0.00005171061,0.003088913,0.0001003975],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957683,0.0002572563,0.00194339,0.00005658003,0.00001501368,0.00009778072,0.0008046292,0.00003377162,0.001023393],"genre_scores_gemma":[0.9852228,0.0005124516,0.009989116,0.0000868323,0.000007753995,0.00008220765,0.001704975,0.0000235325,0.002370419],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9720114,"threshold_uncertainty_score":0.05565125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07091557329923608,"score_gpt":0.2893168748356651,"score_spread":0.2184013015364291,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}