{"id":"W4285803878","doi":"10.1101/2022.07.14.499854","title":"Metagenomic Thermometer","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Science and Technology Agency; National Bioscience Database Center; Japan Society for the Promotion of Science","keywords":"Metagenomics; Thermometer; Biology; Computational biology; Microorganism; Gene; Bacteria; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009501504,0.0009562652,0.0006366197,0.001229559,0.0003416639,0.0007815261,0.0006658222,0.0007871407,0.00450202],"category_scores_gemma":[0.001415195,0.0004339203,0.0005893234,0.0009868644,0.0002036197,0.0007509757,0.0007699706,0.0009459452,0.002849882],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005009228,"about_ca_system_score_gemma":0.0004337378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006236013,"about_ca_topic_score_gemma":0.0006485509,"domain_scores_codex":[0.999081,0.0001331607,0.00005154336,0.0003849635,0.0002880056,0.00006129747],"domain_scores_gemma":[0.999371,0.0001608536,0.0001166171,0.0001482287,0.0001567533,0.00004649305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0009220148,0.0002151538,0.03904636,0.0004164527,0.0002551347,0.0001698826,0.0002745157,0.009688298,0.8323454,0.002856727,0.007264152,0.1065459],"study_design_scores_gemma":[0.00007407637,0.0003452151,0.0380161,0.000119871,0.0002020597,0.0004129592,0.0001338692,0.1873405,0.7256102,0.003486734,0.04409329,0.0001651869],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3259962,0.002108983,0.5911112,0.0007040331,0.0008074539,0.00070347,0.04012566,0.02571015,0.01273282],"genre_scores_gemma":[0.5580734,0.0009472704,0.4074443,0.0007002174,0.0001970822,0.001147157,0.02232381,0.001273557,0.007893249],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.00450202,"threshold_uncertainty_score":0.01506078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01333113280604805,"score_gpt":0.2321523067590753,"score_spread":0.2188211739530273,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}