{"id":"W4285891038","doi":"10.1016/j.xpro.2022.101575","title":"An in vivo biosafety-level-2-compatible model of Mycobacterium tuberculosis infection for drug susceptibility testing","year":2022,"lang":"en","type":"article","venue":"STAR Protocols","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity; University of Ottawa","funders":"Canadian Institutes of Health Research; Lung Health Foundation; National Sanitarium Association","keywords":"Mycobacterium tuberculosis; Virulence; Tuberculosis; Rifampicin; Microbiology; Virology; Biology; Isoniazid; Antibiotics; Medicine; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002515143,0.0001717477,0.0005387592,0.0002687442,0.0001653587,0.000009433699,0.0001446102,0.00006962455,0.0002695531],"category_scores_gemma":[0.001009394,0.0001619314,0.0001282586,0.0005002255,0.00008127918,0.0001567369,0.000124936,0.0003769489,0.000002003154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003352523,"about_ca_system_score_gemma":0.000335373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002284992,"about_ca_topic_score_gemma":0.0007394436,"domain_scores_codex":[0.9976225,0.0004568537,0.0006468677,0.0004635854,0.000301871,0.0005083616],"domain_scores_gemma":[0.9985857,0.0003296391,0.0001595561,0.0005098789,0.0002438412,0.0001713785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001878019,0.001198397,0.4825077,0.001167967,0.00004255338,0.000002666303,0.0004917334,0.007805062,0.5009953,0.0002316732,0.001339015,0.002339905],"study_design_scores_gemma":[0.006944053,0.00724012,0.3889507,0.0002963269,0.00005322028,0.00002288048,0.0003609886,0.4997886,0.08881652,0.004383813,0.002641483,0.0005013078],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9148269,0.000004493415,0.000738962,0.0009718549,0.00002961861,0.08258931,0.0004273545,0.00006863636,0.0003428842],"genre_scores_gemma":[0.8359457,0.000001576942,0.01096138,0.0001922475,0.00006157068,0.1526852,0.00006729678,0.00002762889,0.00005749893],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4919835,"threshold_uncertainty_score":0.6603373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1088908558678063,"score_gpt":0.3909078361815009,"score_spread":0.2820169803136946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}