{"id":"W4286484966","doi":"10.3201/eid2808.220464","title":"Increasing and More Commonly Refractory <i>Mycobacterium avium</i> Pulmonary Disease, Toronto, Ontario, Canada","year":2022,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"West Park Healthcare Centre; Toronto Western Hospital; University of Toronto; University Health Network","funders":"","keywords":"Sputum; Mycobacterium avium complex; Culture conversion; Medicine; Internal medicine; Mycobacterium avium-intracellulare infection; Nontuberculous mycobacteria; Retrospective cohort study; Sputum culture; Pulmonary disease; Mycobacterium; Cohort study; Tuberculosis; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001706593,0.0003084501,0.0003937108,0.00009746244,0.0008140315,0.00006818106,0.0001392287,0.00003425492,0.004831485],"category_scores_gemma":[0.0002777883,0.0003228736,0.000132586,0.0001851369,0.0000919109,0.0002833635,0.0003965867,0.0004132301,0.00000330764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002489739,"about_ca_system_score_gemma":0.002575229,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9641352,"about_ca_topic_score_gemma":0.8541725,"domain_scores_codex":[0.997534,0.0002347079,0.0003155822,0.0005149668,0.0007921868,0.0006085261],"domain_scores_gemma":[0.9978487,0.0002575793,0.0001112974,0.0004943666,0.0001031465,0.001184892],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007755292,0.0005795338,0.9727657,0.0002120437,0.00009913906,0.001019064,0.0001539381,0.00002058837,0.0004308423,0.00002168568,0.02212325,0.001798628],"study_design_scores_gemma":[0.0007244149,0.0001968468,0.8581098,0.00005414415,0.000246889,0.0002965098,0.0002974405,0.00007438187,0.000009264389,0.00002715925,0.139655,0.0003081607],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867694,0.005383503,0.000001867428,0.0009456314,0.0005581505,0.0004591232,0.0004514468,0.0001971734,0.00523364],"genre_scores_gemma":[0.9954692,0.0002645106,0.00001306555,0.002170174,0.0002925383,0.0002755228,0.0005968516,0.00005789396,0.0008602733],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1175317,"threshold_uncertainty_score":0.9999223,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00694333183601669,"score_gpt":0.2400312355504121,"score_spread":0.2330879037143954,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}