{"id":"W4286560385","doi":"10.3389/fmicb.2022.853703","title":"Prophage Diversity Across Salmonella and Verotoxin-Producing Escherichia coli in Agricultural Niches of British Columbia, Canada","year":2022,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Prophage; Biology; Genetics; Salmonella enterica; Salmonella; Microbiology; Plasmid; Escherichia coli; Gene; Virology; Bacteriophage; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003453521,0.0005263223,0.0005129838,0.004586474,0.005764907,0.001797864,0.001504335,0.000413964,0.004191588],"category_scores_gemma":[0.001085188,0.0003907778,0.0002546818,0.006583288,0.0008924038,0.0002631841,0.0009295443,0.000560125,0.0006615959],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02781519,"about_ca_system_score_gemma":0.03209848,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9964168,"about_ca_topic_score_gemma":0.999068,"domain_scores_codex":[0.9991034,0.00003972763,0.0000408417,0.0001731555,0.0003246152,0.0003181857],"domain_scores_gemma":[0.997554,0.00008369395,0.0001383066,0.00003441121,0.00160936,0.0005802607],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006444087,0.0001649224,0.9041374,0.0003462482,0.0001651199,0.001921765,0.006846863,0.00043994,0.01761251,0.0006814194,0.009550162,0.05748936],"study_design_scores_gemma":[0.000007777016,0.00003044758,0.9872425,0.00008017333,0.00002287722,0.0002263577,0.005378134,0.0002294534,0.0005029042,0.00003040785,0.006219174,0.00002979887],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9729158,0.003121897,0.0003441226,0.0004695992,0.00003640755,0.0001509556,0.01065412,0.00005732806,0.01224985],"genre_scores_gemma":[0.9803848,0.002452077,0.0006905127,0.0002514039,0.000005696611,0.00004754894,0.004080308,0.00003074426,0.01205694],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02781519,"threshold_uncertainty_score":0.2018143,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004213912990477844,"score_gpt":0.1768462513077766,"score_spread":0.1726323383172987,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}