{"id":"W4286625681","doi":"10.1101/2022.07.21.501003","title":"Population genomics of <i>Xenopus laevis</i> in southern Africa","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"South African Institute for Aquatic Biodiversity; National Research Foundation; Harvard University; Compute Canada; Johns Hopkins University; Ministry of Environment","keywords":"Biology; Genome; Population; Evolutionary biology; Gene flow; Transposable element; Ploidy; Genetics; Xenopus; Population genomics; Genomics; Nuclear gene; African clawed frog; Gene; Genome evolution; Genetic variation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002549938,0.0001433597,0.0001491034,0.0006548208,0.0002137275,0.0002999299,0.0001084289,0.0001083158,0.0009664048],"category_scores_gemma":[0.0002798938,0.00007172115,0.0001195539,0.000662157,0.0002081012,0.0001234936,0.0001641451,0.0001367857,0.0001000826],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003292921,"about_ca_system_score_gemma":0.0001070558,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004132049,"about_ca_topic_score_gemma":0.004973208,"domain_scores_codex":[0.999885,0.0000268084,0.000005189944,0.00005471299,0.00001248741,0.00001576463],"domain_scores_gemma":[0.9998558,0.00003148833,0.00007103891,0.000008406218,0.00001766293,0.00001569003],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006063876,0.00004738099,0.3339232,0.0001603643,0.000223219,0.0004586736,0.003009583,0.002318888,0.624091,0.001193867,0.0001876007,0.03377984],"study_design_scores_gemma":[0.00001810435,0.0001405045,0.992927,0.0000167795,0.00002891346,0.0003484672,0.000565975,0.0006469046,0.003267721,0.000213032,0.001817532,0.000008987005],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992983,0.00007703515,0.0002252082,0.00001005824,4.581171e-7,0.000002926964,0.0001063975,0.000003828762,0.0002756899],"genre_scores_gemma":[0.9991492,0.00008039927,0.0003696326,0.000006219208,0.000001385209,0.000004794492,0.0002462689,0.000003299999,0.0001388138],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004132049,"threshold_uncertainty_score":0.008216023,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01172828522748399,"score_gpt":0.2061051396520192,"score_spread":0.1943768544245352,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}