{"id":"W4286684968","doi":"10.1186/s12864-022-08735-x","title":"The flax genome reveals orbitide diversity","year":2022,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Protein Hydrolysis and Bioactive Peptides","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Global Institute for Water Security; University of Saskatchewan","funders":"Ministry of Agriculture - Saskatchewan; University of Saskatchewan; Genome Canada","keywords":"Biology; Genome; Linum; Proteome; Genetics; Phylogenetic tree; Computational biology; Tandem repeat; Repeated sequence; Phylogenetics; DNA microarray; Fosmid; Retrotransposon; Evolutionary biology; Gene; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009139599,0.0003719777,0.0002101593,0.0007670073,0.0003270008,0.0003935499,0.000125079,0.0003870446,0.001375047],"category_scores_gemma":[0.0001536283,0.0000862908,0.000275324,0.0009508559,0.000158684,0.0002000163,0.0003111485,0.000287741,0.0003195985],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003209754,"about_ca_system_score_gemma":0.0001657343,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000997321,"about_ca_topic_score_gemma":0.00133195,"domain_scores_codex":[0.9999236,0.000004100764,0.000004818858,0.00003932657,0.00001429984,0.00001388582],"domain_scores_gemma":[0.9998766,0.00002376088,0.00005315756,0.00000744114,0.00001533546,0.00002363009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00104398,0.00003394213,0.02955993,0.0003384556,0.00006292105,0.001051685,0.0002873658,0.0002951057,0.9455592,0.0002547513,0.0006077184,0.0209049],"study_design_scores_gemma":[0.00006397288,0.0003956372,0.8738905,0.00009707943,0.0003102021,0.004480852,0.0004736454,0.001940257,0.08923052,0.0009104452,0.02816215,0.0000447346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908019,0.001128457,0.0009677045,0.0001416445,0.00001097971,0.0000137539,0.005348067,0.0001179057,0.001469667],"genre_scores_gemma":[0.978415,0.0007454355,0.004170642,0.0001439174,0.00002723554,0.0000273092,0.01544762,0.00004271313,0.0009800462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001375047,"threshold_uncertainty_score":0.004599988,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01608314182121034,"score_gpt":0.2190117755092507,"score_spread":0.2029286336880403,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}