{"id":"W4287877651","doi":"10.1101/2022.07.25.501483","title":"Telomere-to-telomere genome assembly of matsutake ( <i>Tricholoma matsutake</i> )","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Biology; Telomere; Genome; Retrotransposon; Genetics; Gene; Mitochondrial DNA; Chromosome; Transposable element","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001135875,0.0003508076,0.0002860195,0.0007461708,0.0003562832,0.0003573832,0.0002880805,0.0003852237,0.0009502025],"category_scores_gemma":[0.0002493937,0.0002299941,0.0005584927,0.0005051201,0.0000973407,0.0002785064,0.0003985725,0.0005541254,0.0008033656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002236926,"about_ca_system_score_gemma":0.0001901075,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002434383,"about_ca_topic_score_gemma":0.003963334,"domain_scores_codex":[0.9999349,0.000005788952,0.000004574436,0.00002520436,0.00001636438,0.0000131921],"domain_scores_gemma":[0.9998381,0.0000340094,0.00002938615,0.0000235296,0.00003768499,0.00003726787],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00011528,0.0000125475,0.001854904,0.0000892392,0.00001767947,0.0001870519,0.0001253606,0.0002224991,0.9926127,0.00005912437,0.0001122412,0.00459135],"study_design_scores_gemma":[0.00003762566,0.0003434752,0.2695131,0.00008742424,0.0002552357,0.001641675,0.0007728244,0.009222575,0.6808783,0.0005796227,0.03659547,0.00007260349],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9597988,0.001435408,0.02597338,0.0001365491,0.00005511097,0.00007122503,0.00899538,0.0004768722,0.003057217],"genre_scores_gemma":[0.875984,0.001041225,0.06883093,0.0001142954,0.00002663418,0.00008285078,0.04801889,0.00062142,0.005279809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002434383,"threshold_uncertainty_score":0.004840434,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01204567445006962,"score_gpt":0.2222929653712293,"score_spread":0.2102472909211597,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}