{"id":"W4288033816","doi":"10.3389/fcimb.2022.924707","title":"Antibiotic and antifungal use in pediatric leukemia and lymphoma patients are associated with increasing opportunistic pathogens and decreasing bacteria responsible for activities that enhance colonic defense","year":2022,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"IWK Health Centre; Research Nova Scotia; W. Garfield Weston Foundation; Nova Scotia Health Research Foundation; Beatrice Hunter Cancer Research Institute","keywords":"Antibiotics; Microbiome; Biology; Gut flora; Immunology; Pediatric cancer; Population; Microbiology; Cancer; Medicine; Bioinformatics; Genetics; Environmental health","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002766655,0.0002504789,0.0004497752,0.000829281,0.000335831,0.0006748803,0.0001512196,0.0003672101,0.001934313],"category_scores_gemma":[0.00126006,0.0001528824,0.0004512723,0.001735219,0.0002337553,0.0004275599,0.0004062777,0.0007925006,0.0002504963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000432002,"about_ca_system_score_gemma":0.0004790844,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002510217,"about_ca_topic_score_gemma":0.00440982,"domain_scores_codex":[0.9993574,0.000118292,0.00009154713,0.0001379233,0.0001711814,0.0001236848],"domain_scores_gemma":[0.9990548,0.0001357903,0.0006184502,0.00002511492,0.00007360429,0.00009214226],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004366466,0.00008311932,0.9778341,0.0001531385,0.00007441494,0.0005382276,0.0001781251,0.00009551305,0.00266496,0.00005000993,0.0003724464,0.0175194],"study_design_scores_gemma":[0.000007826168,0.0002312692,0.994065,0.00005023359,0.0000903959,0.001887709,0.0002997742,0.0001516209,0.0009854183,0.00006526085,0.00215844,0.000007000402],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896656,0.007385741,0.0003309463,0.0002520164,0.00001562587,0.00001649974,0.001287324,0.00001851711,0.001027777],"genre_scores_gemma":[0.9952898,0.002622194,0.0006418757,0.0001320816,0.00002482041,0.00002730885,0.0008206329,0.000008388499,0.0004329307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002510217,"threshold_uncertainty_score":0.006470919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01047683541129781,"score_gpt":0.2133380496770513,"score_spread":0.2028612142657534,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}