{"id":"W4288038559","doi":"10.1128/mbio.00571-22","title":"Coastal Transient Niches Shape the Microdiversity Pattern of a Bacterioplankton Population with Reduced Genomes","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Chinese University of Hong Kong; National Natural Science Foundation of China; National Science Foundation","keywords":"Bacterioplankton; Biology; Genome; Roseobacter; Population; Lineage (genetic); Ecological niche; Marine bacteriophage; Pyrosequencing; Seawater; Comparative genomics; Evolutionary biology; Ecology; Bacteria; Gene; Nutrient; Phytoplankton; Phylogenetics; Genomics; Habitat; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000953367,0.0001567601,0.0002792125,0.0005134536,0.0002598146,0.0006739091,0.0001924215,0.000268854,0.0008313582],"category_scores_gemma":[0.0003294308,0.000231448,0.0002100497,0.0003770857,0.0003271642,0.0002691823,0.0006392334,0.0002670779,0.0003047643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002046694,"about_ca_system_score_gemma":0.0001795634,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001769427,"about_ca_topic_score_gemma":0.003342847,"domain_scores_codex":[0.9998792,0.000008651561,0.000007274375,0.00005239099,0.00002025184,0.0000321297],"domain_scores_gemma":[0.9997757,0.00003540416,0.0000756271,0.00002259466,0.00003309776,0.00005746914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002329555,0.00002490633,0.15337,0.00007879089,0.00003972982,0.0001677237,0.0007021541,0.0003192542,0.8368017,0.0002236062,0.0001678505,0.007871451],"study_design_scores_gemma":[0.00000558687,0.00007227158,0.984849,0.000009107506,0.00002200813,0.0002608088,0.000878184,0.0008519362,0.01198938,0.0001804915,0.0008665472,0.000014686],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990973,0.00012376,0.0002563941,0.00001713804,0.000001056031,0.0000023204,0.0001344917,0.00001763286,0.0003498269],"genre_scores_gemma":[0.9990351,0.00009166278,0.000402446,0.00002866315,0.000001650031,0.000005648169,0.000208958,0.00001286184,0.0002129749],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001769427,"threshold_uncertainty_score":0.003518224,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009155181179495115,"score_gpt":0.1811308564947074,"score_spread":0.1719756753152123,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}