{"id":"W4288068213","doi":"10.1128/spectrum.02303-22","title":"RNA-seq Sample Preparation Kits Strongly Affect Transcriptome Profiles of a Gas-Fermenting Bacterium","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Eesti Teadusagentuur; Australian Research Council; European Commission; Australian Government; Suncor Energy Incorporated","keywords":"Transcriptome; RNA-Seq; Bacteria; Affect (linguistics); Biology; Fermentation; RNA; Computational biology; Genetics; Food science; Gene; Gene expression; Psychology; Communication","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003415433,0.0001872336,0.0002433382,0.00007224489,0.000179767,0.00001081654,0.0002715209,0.0001188325,0.0005307827],"category_scores_gemma":[0.00003170532,0.0001913468,0.0001479438,0.00009348538,0.00007507736,0.000004760836,0.0001504935,0.0001136482,0.000006796034],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002999761,"about_ca_system_score_gemma":0.00006372402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000540102,"about_ca_topic_score_gemma":0.0000315408,"domain_scores_codex":[0.9985692,0.0002943742,0.0002884881,0.0004296411,0.00005934408,0.0003589634],"domain_scores_gemma":[0.9994206,0.00002270519,0.0001782576,0.00031765,0.00002269948,0.00003802782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000284024,0.00008322703,0.0007184754,0.00002475288,0.00007992586,0.000001672598,0.0001208218,0.00004474209,0.9978354,0.0002148809,0.0003040492,0.0002880584],"study_design_scores_gemma":[0.0004156858,0.001223377,0.0003396491,0.000006796914,0.00002524567,0.00005356906,0.00008821501,0.0000108311,0.9829319,0.0002702534,0.01444013,0.0001943932],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959806,0.0003965005,0.001811287,0.0002398158,0.0003489006,0.0004797193,0.0003994178,0.00002264216,0.0003211529],"genre_scores_gemma":[0.9974884,0.00002375378,0.00100236,0.00008684866,0.0001216689,0.0001310573,0.000755888,0.0000266083,0.0003633491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01490351,"threshold_uncertainty_score":0.7802895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008789155718213329,"score_gpt":0.2301610487345683,"score_spread":0.221371893016355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}