{"id":"W4288766334","doi":"10.26443/msurj.v17i1.173","title":"Genome Annotation of Novel K1 Subcluster Mycobacteriophage Blizzard","year":2022,"lang":"en","type":"article","venue":"McGill Science Undergraduate Research Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"McGill University","keywords":"Genome; Biology; Genetics; Gene; GenBank; Computational biology; Annotation; Genome project","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.004185346,0.0001391502,0.0001722495,0.0005060222,0.004011584,0.0002051367,0.001130606,0.00002780828,0.003178366],"category_scores_gemma":[0.0001523059,0.0001270075,0.0001141297,0.002416792,0.001174795,0.001235388,0.001418132,0.0009679151,0.0001400432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001408414,"about_ca_system_score_gemma":0.0001422997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003500967,"about_ca_topic_score_gemma":0.00007614683,"domain_scores_codex":[0.9960697,0.0002640669,0.0004391195,0.000430109,0.001939652,0.0008573958],"domain_scores_gemma":[0.9988526,0.00009139023,0.000227229,0.0003149153,0.0001733271,0.0003405451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004662851,0.0002508304,0.0001778263,0.000004010139,0.000007936335,0.00002575823,0.0001830045,0.00203645,0.9943003,0.0003306609,0.0004644589,0.002172149],"study_design_scores_gemma":[0.00510493,0.003425251,0.2665241,0.00009316798,0.00005826162,0.007426584,0.004225816,0.007786435,0.1374032,0.007386836,0.5590159,0.001549611],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9830103,0.00001898083,0.0005420722,0.00417881,0.0005190891,0.0002663402,0.00008876064,0.00001828363,0.01135737],"genre_scores_gemma":[0.9967394,0.00007148241,0.00111622,0.0001233072,0.00005157377,0.00001675153,0.000004989457,0.00001704125,0.001859218],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8568971,"threshold_uncertainty_score":0.9977329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05452330493575367,"score_gpt":0.3406911165640371,"score_spread":0.2861678116282834,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}