{"id":"W4289520811","doi":"10.1099/ijsem.0.005457","title":"Pseudovibrio flavus sp. nov. isolated from the sea sponge Verongula gigantea","year":2022,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nautilus Biosciences (Canada); University of Prince Edward Island","funders":"","keywords":"Biology; 16S ribosomal RNA; Phylogenetic tree; Alphaproteobacteria; Botany; genomic DNA; Genus; Strain (injury); Ribosomal RNA; Clade; Monophyly; Gene; Microbiology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004188331,0.0001297652,0.0002609157,0.00005264927,0.0001850048,0.00001879213,0.0004986543,0.0000594304,0.00006332119],"category_scores_gemma":[0.00008115653,0.00009283191,0.000130434,0.00004196777,0.0001153613,0.000002433053,0.0003568167,0.0001438261,0.000005601582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005405379,"about_ca_system_score_gemma":0.0000923923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000622414,"about_ca_topic_score_gemma":0.00001474659,"domain_scores_codex":[0.998766,0.0002717582,0.0005288406,0.0001695749,0.0001273606,0.0001364555],"domain_scores_gemma":[0.9990447,0.0001111996,0.0004122366,0.0001542344,0.0002404989,0.00003708478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007052765,0.0001467893,0.03280082,0.0001701498,0.002245425,0.00007134601,0.0006522904,0.000776956,0.9427203,0.0002293346,0.01938069,0.0001006343],"study_design_scores_gemma":[0.02761478,0.01192025,0.3794579,0.005482568,0.003128476,0.1440291,0.04235972,0.004542199,0.02755626,0.009754308,0.3391068,0.005047689],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.980885,0.01553364,0.000466975,0.001082355,0.001454158,0.0001740043,0.0003415034,0.000001660125,0.00006070319],"genre_scores_gemma":[0.998217,0.0003429701,0.0002767562,0.0004456877,0.0004457988,0.00001256926,0.00009620178,0.00001074495,0.0001522933],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.915164,"threshold_uncertainty_score":0.3785576,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009138743961964247,"score_gpt":0.2157411450712985,"score_spread":0.2066024011093342,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}