{"id":"W4289549683","doi":"10.31219/osf.io/rfp94","title":"Metagenomic datasets of cerebrospinal fluid from a small cohort of MS/non-MS patients do not show DNA from the fungal genus Trichosporon","year":2018,"lang":"en","type":"preprint","venue":"","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Metagenomics; DNA sequencing; Biology; Cerebrospinal fluid; Cohort; Trichosporon; Genome; Computational biology; DNA; Medicine; Gene; Genetics; Pathology; Yeast","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006920106,0.0009189826,0.0009766611,0.001746853,0.001239781,0.001265987,0.0007519188,0.0009725522,0.001969231],"category_scores_gemma":[0.002528539,0.0003479254,0.0009900801,0.002094272,0.000405002,0.0004156457,0.0009667671,0.000713249,0.001096166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008934682,"about_ca_system_score_gemma":0.001804978,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02281556,"about_ca_topic_score_gemma":0.05238454,"domain_scores_codex":[0.999303,0.00006389934,0.00005884152,0.0002540217,0.0001705353,0.0001495978],"domain_scores_gemma":[0.9991085,0.0001834962,0.0001164694,0.0002190257,0.0002466643,0.0001257613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006283695,0.0005426804,0.5383174,0.003133958,0.003530563,0.002056276,0.001702614,0.003453922,0.3265334,0.0006714793,0.02802484,0.08574924],"study_design_scores_gemma":[0.0002096776,0.0007552631,0.8327557,0.0003896797,0.00228721,0.004235952,0.001836535,0.007023565,0.06148567,0.001627868,0.08723466,0.0001582462],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7930668,0.004300753,0.004837996,0.0009043714,0.000133675,0.0001422011,0.1936687,0.0008629638,0.002082428],"genre_scores_gemma":[0.6938472,0.001446054,0.01476471,0.0005816376,0.00005934931,0.0001834262,0.2870317,0.0003053204,0.001780552],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02281556,"threshold_uncertainty_score":0.04536551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02689400117450254,"score_gpt":0.2627160379364262,"score_spread":0.2358220367619236,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}