{"id":"W4290038921","doi":"10.1016/j.tim.2022.06.003","title":"Role of metabolism in uropathogenic Escherichia coli","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; Escherichia coli; Virulence; Microbiology; Urinary system; Colonization; Function (biology); Pathogenesis; Gene; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006206058,0.000454142,0.001758765,0.0006346707,0.00003862675,0.000005334633,0.0007695702,0.0004978795,0.0003768519],"category_scores_gemma":[0.0001696005,0.0004202667,0.0004536638,0.001023361,0.0002438985,0.000001963861,0.001074889,0.0007111945,0.000008769292],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008608495,"about_ca_system_score_gemma":0.0003062865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008209427,"about_ca_topic_score_gemma":0.0004822695,"domain_scores_codex":[0.9966303,0.001129537,0.0008138691,0.0007538812,0.00007344307,0.0005990342],"domain_scores_gemma":[0.9989022,0.00008271243,0.0003263135,0.0006115449,0.00002844985,0.0000487719],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006905931,0.0003126516,0.00009883777,0.001159197,0.0003210949,0.00002612097,0.00008483266,0.000004862606,0.1955804,0.00009903542,0.0006482718,0.8015956],"study_design_scores_gemma":[0.0003872151,0.000156261,0.0001494823,0.0001621977,0.00009095543,0.00002732779,0.000038423,8.789262e-7,0.0003637621,0.00001129987,0.9982741,0.0003381308],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006549957,0.9907908,5.864273e-7,0.000007450437,0.0001563368,0.0003012774,0.0002868409,0.000007305867,0.001899462],"genre_scores_gemma":[0.0006585294,0.9966804,0.0002464665,0.00003000449,0.00009152851,0.0003722615,0.001131724,0.00006443558,0.0007246364],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9976258,"threshold_uncertainty_score":0.9998249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02896185162703898,"score_gpt":0.3282985276595032,"score_spread":0.2993366760324642,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}