{"id":"W4291016130","doi":"10.1093/ve/veac050","title":"Recurrent SARS-CoV-2 mutations in immunodeficient patients","year":2022,"lang":"en","type":"article","venue":"Virus Evolution","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":137,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Sheffield Teaching Hospitals NHS Foundation Trust; Quadram Institute Bioscience; University College London Hospitals NHS Foundation Trust; Newcastle upon Tyne Hospitals NHS Foundation Trust; Queen's University Belfast; Public Health England; Royal Marsden NHS Foundation Trust; Swansea University; University of Brighton; University of Oxford; University of Southampton; University College London; Directorate for Biological Sciences; Imperial College London; University of St Andrews; Queen's University; University of East Anglia; National Institute for Health and Care Research; Public Health Agency; Royal Free London NHS Foundation Trust; University Hospital Southampton NHS Foundation Trust; King's College Hospital NHS Foundation Trust; UK Research and Innovation; King's College London; University of Portsmouth; University of Exeter; Northumbria University; Public Health Wales; Middlesex University","keywords":"Mutation; Biology; Gene; Genetics; Virus; Virology; Computational biology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003478694,0.0001822618,0.0002012164,0.0008465233,0.0002879276,0.0005040402,0.0001850102,0.0003900065,0.002412468],"category_scores_gemma":[0.001851582,0.00009403178,0.000208356,0.0007731822,0.0002157942,0.0003134888,0.0002919089,0.0002532474,0.0002834852],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001832911,"about_ca_system_score_gemma":0.000187545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001162151,"about_ca_topic_score_gemma":0.001484791,"domain_scores_codex":[0.9996958,0.0000449766,0.00005518622,0.0001051672,0.00005649643,0.0000424649],"domain_scores_gemma":[0.9993846,0.0001959624,0.0002114136,0.00004165708,0.00006351705,0.00010271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000375469,0.00003749585,0.9742953,0.00008635061,0.00004652406,0.0081854,0.0003007814,0.0001088398,0.004113674,0.0001157677,0.0006357908,0.01169859],"study_design_scores_gemma":[0.00003156991,0.0003264047,0.957207,0.00008009181,0.00007331576,0.03553685,0.0007960821,0.0003591457,0.001996234,0.0002404126,0.003335867,0.00001700595],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975473,0.0007804557,0.000105233,0.00007302527,0.000006159084,0.00001066187,0.0006089227,0.000006619868,0.0008616009],"genre_scores_gemma":[0.9989246,0.0002213353,0.0001409794,0.00004592885,0.000007690245,0.000003495841,0.0005549458,0.000002051981,0.0000989045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002412468,"threshold_uncertainty_score":0.008070529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04404097536953164,"score_gpt":0.3452378374839568,"score_spread":0.3011968621144252,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}