{"id":"W4291016546","doi":"10.1038/s41586-022-05200-3","title":"Context-specific emergence and growth of the SARS-CoV-2 Delta variant","year":2022,"lang":"en","type":"article","venue":"Nature","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Michael's Hospital; Toronto General Hospital; University of Toronto; University Health Network; BlueDot (Canada)","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; Canadian Institutes of Health Research; University of Oxford; Vlaamse regering; Fonds De La Recherche Scientifique - FNRS; KU Leuven; Fundação de Amparo à Pesquisa do Estado de São Paulo; Directorate for Biological Sciences; National Institutes of Health; Fast Grants; Natural Environment Research Council; UK Research and Innovation; Academy of Medical Sciences; Wellcome Trust; National Institute for Health and Care Research; Rockefeller Foundation; Foreign, Commonwealth and Development Office; Fondation Botnar; European Commission; Biotechnology and Biological Sciences Research Council; Bill and Melinda Gates Foundation","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Context (archaeology); Coronavirus disease 2019 (COVID-19); Delta; 2019-20 coronavirus outbreak; Biology; Virology; Pandemic; Genetics; Medicine; Physics; Outbreak; Infectious disease (medical specialty); Paleontology; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003027697,0.0001054438,0.0001906849,0.00008015647,0.0001779497,0.00001006529,0.0002957924,0.0002332156,0.00004787923],"category_scores_gemma":[0.0001680455,0.00007138142,0.0000853394,0.0005204949,0.0001139618,0.00003587567,0.0002856937,0.001979111,0.000004742607],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004209567,"about_ca_system_score_gemma":0.0001777201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001438773,"about_ca_topic_score_gemma":0.00003707207,"domain_scores_codex":[0.9986866,0.0000831802,0.000162805,0.0002523199,0.0006092147,0.0002059047],"domain_scores_gemma":[0.9993356,0.00007174339,0.00005504709,0.0003661992,0.0001552093,0.00001622619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006765536,0.000272689,0.04390879,0.0001703613,0.0001191776,0.0002681332,0.001250167,1.422703e-7,0.8265806,0.02688298,0.09368299,0.006187422],"study_design_scores_gemma":[0.001383754,0.0002296859,0.02092385,0.00003886816,0.00003737191,0.0002703715,0.0004186815,0.0001243232,0.3332898,0.001490055,0.641653,0.0001402348],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823228,0.01016569,0.00001965733,0.003876013,0.000430255,0.000377473,0.00004892726,0.00002498171,0.002734203],"genre_scores_gemma":[0.953405,0.00002420156,0.00002829832,0.04634682,0.00009032084,0.00002304597,0.000002273088,0.00001522689,0.00006487434],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.54797,"threshold_uncertainty_score":0.859836,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03365928782606058,"score_gpt":0.3271595579187769,"score_spread":0.2935002700927163,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}