{"id":"W4291306567","doi":"10.1186/s12864-022-08743-x","title":"Mitochondrial genome sequencing, mapping, and assembly benchmarking for Culicoides species (Diptera: Ceratopogonidae)","year":2022,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Canadian Food Inspection Agency; University of Toronto; University of Guelph","funders":"Canadian Food Inspection Agency; University of Guelph; U.S. Department of Agriculture","keywords":"Biology; Culicoides; Mitochondrial DNA; Genome; Ceratopogonidae; Evolutionary biology; Genetics; Sequence assembly; DNA barcoding; Gene; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002483245,0.0009835983,0.0004804756,0.001862496,0.001174773,0.0008604673,0.0006500661,0.0006312296,0.002344044],"category_scores_gemma":[0.005265516,0.000367274,0.001011246,0.001256881,0.0002817734,0.0008344742,0.0008919949,0.0006415469,0.001501615],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006434782,"about_ca_system_score_gemma":0.0006940895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002988721,"about_ca_topic_score_gemma":0.006712824,"domain_scores_codex":[0.9988399,0.0002046664,0.0001179833,0.0005154248,0.0002166715,0.0001053103],"domain_scores_gemma":[0.9978817,0.0004641098,0.0003638923,0.0003164771,0.0007730569,0.0002006327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003523508,0.0004805945,0.1218863,0.005058651,0.00123831,0.001121717,0.003491569,0.01527265,0.5477594,0.002233445,0.0258418,0.2720921],"study_design_scores_gemma":[0.0003241861,0.002249463,0.3747931,0.0009245602,0.001804336,0.002764085,0.001676127,0.1430771,0.3468718,0.00376447,0.1214066,0.0003441629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8571285,0.005274293,0.07541552,0.0004281716,0.0002952328,0.0003889612,0.04601714,0.009604102,0.00544813],"genre_scores_gemma":[0.6032224,0.001570206,0.2398488,0.0001671871,0.00008697003,0.0004528173,0.1505438,0.002205329,0.001902469],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002988721,"threshold_uncertainty_score":0.01313281,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02693347293724846,"score_gpt":0.2297043921882076,"score_spread":0.2027709192509591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}