{"id":"W4292210428","doi":"10.1128/spectrum.02045-22","title":"A Pilot Study: the Development of a Facility-Associated Microbiome and Its Association with the Presence of <i>Listeria</i> Spp. in One Small Meat Processing Facility","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Colorado State University","keywords":"Sanitation; Microbiome; Environmental health; Listeria monocytogenes; Listeria; Business; Gut microbiome; Meat packing industry; Quality (philosophy); Medicine; Food science; Biology; Environmental science; Environmental engineering; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001275419,0.0001786158,0.0002973035,0.00003997012,0.0002371533,0.00001192356,0.000419128,0.00006263949,0.00001361219],"category_scores_gemma":[0.00007803904,0.0001234269,0.00003069299,0.0002288437,0.0001574049,0.000004545646,0.0007706111,0.0001908609,7.330702e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001328154,"about_ca_system_score_gemma":0.0002125447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000083251,"about_ca_topic_score_gemma":0.004970489,"domain_scores_codex":[0.9981307,0.0006255339,0.0004444044,0.0004163641,0.00008925135,0.0002937951],"domain_scores_gemma":[0.9991328,0.00005857169,0.0004059542,0.0003041574,0.00007946376,0.0000190275],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006635677,0.0005151617,0.04446293,0.00003278987,0.0001794063,7.340078e-7,0.001673608,0.00002695984,0.9523007,0.000001750981,0.00003009987,0.000112331],"study_design_scores_gemma":[0.001937502,0.002429995,0.06104804,0.0000166705,0.00006284122,0.00002251921,0.001518126,0.000006284259,0.9295831,0.000008634574,0.003105035,0.0002612607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975734,0.0005724991,0.00004737395,0.0004966789,0.00006674345,0.0008173722,0.0003856732,0.000007108853,0.00003319338],"genre_scores_gemma":[0.9993514,0.000007338332,0.00007808721,0.00008994484,0.000008476895,0.00008553881,0.0001840016,0.000008080915,0.0001871664],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02271756,"threshold_uncertainty_score":0.5033202,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05688250010222754,"score_gpt":0.259850671844891,"score_spread":0.2029681717426635,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}