{"id":"W4292210428","doi":"10.1128/spectrum.02045-22","title":"A Pilot Study: the Development of a Facility-Associated Microbiome and Its Association with the Presence of <i>Listeria</i> Spp. in One Small Meat Processing Facility","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Colorado State University","keywords":"Sanitation; Microbiome; Environmental health; Listeria monocytogenes; Listeria; Business; Gut microbiome; Meat packing industry; Quality (philosophy); Medicine; Food science; Biology; Environmental science; Environmental engineering; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001782341,0.0005832415,0.000256298,0.0003411244,0.0008452788,0.0006645809,0.0004200459,0.0006165057,0.00212496],"category_scores_gemma":[0.002544014,0.0002360334,0.0006285378,0.0001975541,0.0007072159,0.0007323338,0.0007480521,0.0007534027,0.0003293869],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000542085,"about_ca_system_score_gemma":0.001414198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004187641,"about_ca_topic_score_gemma":0.005900663,"domain_scores_codex":[0.9990866,0.0003809153,0.00005451883,0.0002196914,0.00008890432,0.0001694362],"domain_scores_gemma":[0.9965244,0.0008680122,0.0007427681,0.000355331,0.0005005077,0.001008906],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006365649,0.008868321,0.8958896,0.0002604641,0.0001894586,0.0029236,0.004637104,0.0001894456,0.06475759,0.0001611749,0.0009446758,0.014813],"study_design_scores_gemma":[0.0002425577,0.06004767,0.9182491,0.00005706944,0.0001732568,0.002478947,0.007574251,0.00069958,0.008643287,0.0001134643,0.00166055,0.00006018062],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990891,0.00001523923,0.0004162569,0.00005564311,0.000009151299,0.0001050702,0.00009603655,0.000009518487,0.0002040672],"genre_scores_gemma":[0.9983112,0.00002031149,0.0009647757,0.0001149836,0.00001367781,0.0001070813,0.0001243605,0.000006573645,0.0003370202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004187641,"threshold_uncertainty_score":0.009426057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05688250010222754,"score_gpt":0.259850671844891,"score_spread":0.2029681717426635,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}