{"id":"W4292249508","doi":"10.1101/2022.08.17.22278897","title":"A Pair Formation Model with Recovery: Application to Monkeypox","year":2022,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University; Toronto Centre for Phenogenomics; Mount Allison University","funders":"","keywords":"Monkeypox; Outbreak; Basic reproduction number; Virology; Public health; Immunity; Transmission (telecommunications); Biology; Immunology; Computer science; Medicine; Environmental health; Telecommunications; Immune system; Genetics; Vaccinia","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001533568,0.0009178581,0.001471826,0.0008313646,0.001349932,0.001446044,0.002220928,0.002672184,0.007881008],"category_scores_gemma":[0.00748983,0.0004213933,0.001570188,0.000666708,0.001928122,0.001645775,0.002896881,0.002405565,0.0005973319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001695913,"about_ca_system_score_gemma":0.00128744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02506293,"about_ca_topic_score_gemma":0.009189082,"domain_scores_codex":[0.99946,0.0002336649,0.00001802673,0.00009107235,0.00006200712,0.0001352415],"domain_scores_gemma":[0.9973381,0.001413535,0.0005137245,0.0001165604,0.0002665179,0.0003515008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001497008,0.0001125499,0.005139084,0.0001086014,0.0001054965,0.001028094,0.0005400696,0.8396317,0.001073232,0.1403524,0.004218063,0.007541134],"study_design_scores_gemma":[0.00003690314,0.00006079515,0.0004928088,0.0000111799,0.00002643243,0.00008138293,0.0001547232,0.9733104,0.00007458331,0.02453374,0.001194312,0.00002275617],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4507082,0.002310541,0.4897399,0.006523475,0.0005134167,0.0003269051,0.0009881804,0.0004333928,0.04845594],"genre_scores_gemma":[0.963495,0.0006990871,0.01456798,0.0002798652,0.0001291983,0.0001837394,0.0002095726,0.00006017873,0.0203754],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.02506293,"threshold_uncertainty_score":0.04983407,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02172439908733174,"score_gpt":0.2691036209530513,"score_spread":0.2473792218657196,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}