{"id":"W4292263777","doi":"10.1186/s12866-022-02615-w","title":"Fungal diversity in the gut microbiome of young South African children","year":2022,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"Unitaid; Medical Research Council; National Institute of Allergy and Infectious Diseases; Harry Crossley Foundation; Wellcome Trust","keywords":"Mycobiota; Biology; Microbiome; Species richness; Alpha diversity; Microbial ecology; Internal transcribed spacer; Ecology; Population; Zoology; Bacteria; Ribosomal RNA; Genetics; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037231,0.0003858081,0.000332616,0.001098344,0.0007662833,0.0008660049,0.0001746311,0.0003100534,0.001852019],"category_scores_gemma":[0.001073268,0.0002623339,0.0002332326,0.001143807,0.0004477982,0.0004645119,0.0006311396,0.000336297,0.0001693466],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004500527,"about_ca_system_score_gemma":0.0004580906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007400071,"about_ca_topic_score_gemma":0.009454479,"domain_scores_codex":[0.9997132,0.00004193102,0.00002130138,0.00007520187,0.00006910336,0.00007915806],"domain_scores_gemma":[0.9996409,0.00005910149,0.000173601,0.00001029491,0.00004552954,0.00007052385],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002174798,0.00003815661,0.9781042,0.0001778463,0.00003923376,0.0005838446,0.00301913,0.00005867273,0.007468419,0.00006401338,0.0001581762,0.01007081],"study_design_scores_gemma":[0.00000439852,0.0001045309,0.9963022,0.00005203621,0.0000200336,0.000831219,0.001647924,0.0000378435,0.0003980483,0.00003329091,0.000563717,0.000004792526],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986852,0.0008064269,0.00003906843,0.00003437186,0.000002336934,0.0000114956,0.0001962727,0.000001254146,0.0002234544],"genre_scores_gemma":[0.9986681,0.0007401725,0.0002506952,0.00002859785,0.000004428945,0.00001670438,0.0001361648,0.000001811763,0.000153395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007400071,"threshold_uncertainty_score":0.014714,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01461951384251153,"score_gpt":0.2269665047080768,"score_spread":0.2123469908655652,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}