{"id":"W4292476192","doi":"10.3390/jof8080863","title":"Targeted NGS-Based Analysis of Pneumocystis jirovecii Reveals Novel Genotypes","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network","funders":"National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation","keywords":"Pneumocystis jirovecii; Biology; Genotype; Pneumocystis pneumonia; Genotyping; Pneumocystosis; Pneumocystis carinii; Virology; Microbiology; Typing; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002905705,0.0003310251,0.0002284945,0.0006036075,0.0001874132,0.0003454307,0.0001344362,0.0003328361,0.0005870597],"category_scores_gemma":[0.0005535574,0.0001502697,0.0002690289,0.000368323,0.000240514,0.0001280431,0.0003086745,0.0002650452,0.0003437303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000216208,"about_ca_system_score_gemma":0.0002106168,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001657751,"about_ca_topic_score_gemma":0.004430418,"domain_scores_codex":[0.9996569,0.00003017512,0.00003352584,0.0001399142,0.00008411309,0.00005537851],"domain_scores_gemma":[0.9996848,0.00008944414,0.00009981642,0.00003418399,0.00004883768,0.0000427961],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001610611,0.00003582223,0.0392059,0.00009014292,0.00002621911,0.0002642862,0.0002157481,0.0004807364,0.9485131,0.0001240728,0.0002513622,0.01063159],"study_design_scores_gemma":[0.00002478873,0.0004690025,0.4097281,0.00008679729,0.0001080599,0.001404858,0.0006213049,0.01122527,0.5641022,0.0004994289,0.01169244,0.00003776681],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9777844,0.0005034106,0.01441934,0.0001112847,0.00002441737,0.00009893864,0.004833572,0.0002029344,0.002021773],"genre_scores_gemma":[0.9692118,0.0002736102,0.02307805,0.0001875742,0.000008065706,0.00006838128,0.005064027,0.00005347836,0.002054926],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001657751,"threshold_uncertainty_score":0.003296137,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01562952927986163,"score_gpt":0.2647060468182658,"score_spread":0.2490765175384042,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}