{"id":"W4292534318","doi":"10.1094/phytofr-06-22-0068-sc","title":"Whole Genome Sequencing Suggests that “Nonpathogenicity on Banana (NPB)” Is the Ancestral State of the <i>Ralstonia solanacearum</i> IIB-4 Lineage","year":2022,"lang":"en","type":"article","venue":"PhytoFrontiers™","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"College of Agricultural and Environmental Sciences, University of California, Davis; Institute of Food and Agricultural Sciences, University of Florida","keywords":"Subclade; Ralstonia solanacearum; Biology; Virulence; Phylogenetic tree; Lineage (genetic); Genetics; Phylogenetics; Population; Genome; Clade; Botany; Gene; Pathogen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005563255,0.00024685,0.0003273943,0.00001316748,0.001047564,0.00004491898,0.0009512233,0.00003878706,0.0001317139],"category_scores_gemma":[0.00002688264,0.00007655674,0.0002707304,0.0004130947,0.0001843489,0.0001049996,0.0004695962,0.0003823377,0.00001254206],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001429368,"about_ca_system_score_gemma":0.00003988109,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002454549,"about_ca_topic_score_gemma":0.0005986632,"domain_scores_codex":[0.9979309,0.0003203636,0.0002920894,0.0004218227,0.0005244051,0.0005104342],"domain_scores_gemma":[0.9992115,0.0001373894,0.0003061356,0.000239443,0.00003977009,0.00006576425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001050833,0.00007713481,0.01541178,0.00001168058,0.00008851558,0.0000130643,0.001145664,0.0002649201,0.9695193,0.00001456246,0.008030004,0.005318298],"study_design_scores_gemma":[0.000351612,0.0004622628,0.7456717,0.00003200135,0.00008219301,0.00003810796,0.002055018,0.0003085771,0.04986192,0.0003409092,0.2002644,0.0005313411],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903495,0.000810284,0.000002794357,0.004081806,0.0005838451,0.000420433,0.003229661,0.00004377299,0.0004778593],"genre_scores_gemma":[0.9965596,0.0001259611,0.00004692682,0.001433071,0.0001501455,0.00004907016,0.00005849349,0.000003320128,0.001573377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9196573,"threshold_uncertainty_score":0.8057118,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02671420351995981,"score_gpt":0.2012241164457703,"score_spread":0.1745099129258105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}