{"id":"W4292534318","doi":"10.1094/phytofr-06-22-0068-sc","title":"Whole Genome Sequencing Suggests that “Nonpathogenicity on Banana (NPB)” Is the Ancestral State of the <i>Ralstonia solanacearum</i> IIB-4 Lineage","year":2022,"lang":"en","type":"article","venue":"PhytoFrontiers™","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"College of Agricultural and Environmental Sciences, University of California, Davis; Institute of Food and Agricultural Sciences, University of Florida","keywords":"Subclade; Ralstonia solanacearum; Biology; Virulence; Phylogenetic tree; Lineage (genetic); Genetics; Phylogenetics; Population; Genome; Clade; Botany; Gene; Pathogen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002482651,0.0004678627,0.0002724397,0.0005320102,0.0004881516,0.0006618801,0.0002533457,0.0003551145,0.001665069],"category_scores_gemma":[0.0004259059,0.0002240999,0.000482952,0.0008209391,0.0002566644,0.0003522777,0.0004328264,0.0007080771,0.0006706262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004078831,"about_ca_system_score_gemma":0.0004268086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005491407,"about_ca_topic_score_gemma":0.007108712,"domain_scores_codex":[0.9998602,0.000009967433,0.000009710083,0.00006140485,0.00003253536,0.00002628848],"domain_scores_gemma":[0.9997231,0.00003767901,0.00009207473,0.00003444613,0.00007152769,0.00004110508],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000390211,0.0000560061,0.09098211,0.0002118445,0.00009316009,0.000239752,0.0003604614,0.0004507856,0.8879359,0.0005055023,0.0006033792,0.01817093],"study_design_scores_gemma":[0.00002912679,0.0003094048,0.9214919,0.000118938,0.0001963632,0.0009889288,0.0008114756,0.003258752,0.0487598,0.0008052305,0.02318582,0.00004434718],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845452,0.0004752763,0.004365906,0.0001917905,0.00002804019,0.00004234225,0.005169191,0.0001469034,0.00503528],"genre_scores_gemma":[0.9601647,0.0008111404,0.01060154,0.0004383831,0.00002528562,0.00006157583,0.02502619,0.0001157473,0.002755457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005491407,"threshold_uncertainty_score":0.01091886,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02671420351995981,"score_gpt":0.2012241164457703,"score_spread":0.1745099129258105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}