{"id":"W4292596079","doi":"10.3897/phytokeys.205.85866","title":"Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae)","year":2022,"lang":"en","type":"article","venue":"PhytoKeys","topic":"Plant Taxonomy and Phylogenetics","field":"Agricultural and Biological Sciences","cited_by":73,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Pantropical; Monophyly; Caesalpinioideae; Clade; Biology; Synapomorphy; Subfamily; Evolutionary biology; Zoology; Genus; Phylogenetics; Botany; Fabaceae; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002916071,0.000240801,0.0003123376,0.0007991357,0.0003919114,0.000545788,0.0001849384,0.0002469198,0.0009496477],"category_scores_gemma":[0.0006708116,0.0001232758,0.0003642088,0.0009395808,0.000358476,0.0004057192,0.0006149134,0.0003689572,0.0004926717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000212706,"about_ca_system_score_gemma":0.0001919077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008320918,"about_ca_topic_score_gemma":0.001795302,"domain_scores_codex":[0.9997442,0.00003500226,0.00002172604,0.0001167606,0.00004481112,0.00003746181],"domain_scores_gemma":[0.9994943,0.0001927288,0.0001351709,0.00006040723,0.00006530271,0.00005209625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003345342,0.00004633064,0.1643647,0.000554944,0.0001829718,0.0004759612,0.001813505,0.0007121407,0.7981869,0.0005574612,0.0002693874,0.03250118],"study_design_scores_gemma":[0.00001305603,0.0001631105,0.9722949,0.0001034858,0.0001768791,0.0008749584,0.001555366,0.002318892,0.01385966,0.0006292451,0.007985436,0.00002505499],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958683,0.0007540924,0.001385396,0.00006888086,0.000006013401,0.000006632966,0.001045277,0.00003475004,0.0008305747],"genre_scores_gemma":[0.9925848,0.0004340762,0.0021688,0.0001289999,0.000006783439,0.00002092216,0.004204636,0.0000375973,0.0004134046],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009496477,"threshold_uncertainty_score":0.003176928,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04403193700952717,"score_gpt":0.2265873828488936,"score_spread":0.1825554458393664,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}