{"id":"W4292596079","doi":"10.3897/phytokeys.205.85866","title":"Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae)","year":2022,"lang":"en","type":"article","venue":"PhytoKeys","topic":"Plant Taxonomy and Phylogenetics","field":"Agricultural and Biological Sciences","cited_by":73,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Pantropical; Monophyly; Caesalpinioideae; Clade; Biology; Synapomorphy; Subfamily; Evolutionary biology; Zoology; Genus; Phylogenetics; Botany; Fabaceae; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003304094,0.0001098812,0.0002585063,0.00004921548,0.0002478445,0.00001494763,0.0003036949,0.0000355163,0.0001704281],"category_scores_gemma":[0.0000339206,0.0000483224,0.0001839321,0.0009248113,0.00004103935,0.00002874228,0.00008988629,0.00008186956,0.000003499088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003113576,"about_ca_system_score_gemma":0.000009128992,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002210793,"about_ca_topic_score_gemma":0.0006882316,"domain_scores_codex":[0.9989521,0.0001717506,0.0002981801,0.0002286394,0.0001384114,0.0002109385],"domain_scores_gemma":[0.9992341,0.000382953,0.0001969069,0.00008730574,0.00006587614,0.00003287665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001820362,0.0001246881,0.04703074,0.00001175164,0.0002596343,0.000002890408,0.0006769061,0.01335226,0.901288,0.0004365672,0.001611014,0.03502355],"study_design_scores_gemma":[0.000297762,0.0004002026,0.9162297,0.000004679358,0.0003670279,0.00000283599,0.003446154,0.008524,0.004082797,0.0007866679,0.0655382,0.0003199645],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975383,0.0007258361,0.000007726976,0.0006390304,0.0001305869,0.0003487148,0.0004208414,0.0000120644,0.0001769272],"genre_scores_gemma":[0.9986027,0.0001196913,0.0001742033,0.0006248375,0.0001050025,0.0000936591,0.0002290052,0.000001400675,0.00004953113],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8972052,"threshold_uncertainty_score":0.197053,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04403193700952717,"score_gpt":0.2265873828488936,"score_spread":0.1825554458393664,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}