{"id":"W4292641622","doi":"10.3138/jammi-2022-0015","title":"Characteristics of polymerase chain reaction–positive syphilis cases in Manitoba, Canada, 2017 to 2020: Demographic analysis, specimen types, and <i>Treponema pallidum</i> gene targets","year":2022,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"International Centre for Infectious Diseases; Manitoba Health; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Syphilis; Treponema; Medicine; Congenital syphilis; Polymerase chain reaction; Internal medicine; Obstetrics; Immunology; Virology; Biology; Gene; Genetics; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005114572,0.000102887,0.00047375,0.0001500535,0.0001106057,0.00000352034,0.00008110995,0.00006035542,0.00007041713],"category_scores_gemma":[0.0008263619,0.00007857136,0.00009919247,0.0003305046,0.00004491633,0.00001876668,0.00006803733,0.0002430675,3.235623e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008498972,"about_ca_system_score_gemma":0.001808196,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7105122,"about_ca_topic_score_gemma":0.9607825,"domain_scores_codex":[0.9986126,0.0002629115,0.0005002241,0.0001282629,0.0003528782,0.0001430543],"domain_scores_gemma":[0.9984105,0.0003703742,0.0006870329,0.0001062855,0.0001637651,0.0002620295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002003534,0.0002732167,0.9885018,0.00002255263,0.001297598,0.0004410994,0.00005502696,0.00001482296,0.00128572,0.00001168648,0.007497971,0.0003981573],"study_design_scores_gemma":[0.0009937811,0.0002047135,0.994665,0.00005282257,0.001042016,0.000291814,0.00008267457,0.000008869272,0.0004886494,0.00001023659,0.002092359,0.00006701344],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867029,0.002243927,9.077191e-7,0.009755706,0.0003196623,0.0001610534,0.0008025293,0.00000117224,0.00001212235],"genre_scores_gemma":[0.9971956,0.0008164171,0.000002928414,0.001809204,0.00007622336,0.000007013914,0.00006423158,0.000004983084,0.00002338339],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2502703,"threshold_uncertainty_score":0.3207662,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004806498495549514,"score_gpt":0.2107626080000987,"score_spread":0.2059561095045492,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}