{"id":"W4292641622","doi":"10.3138/jammi-2022-0015","title":"Characteristics of polymerase chain reaction–positive syphilis cases in Manitoba, Canada, 2017 to 2020: Demographic analysis, specimen types, and <i>Treponema pallidum</i> gene targets","year":2022,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"International Centre for Infectious Diseases; Manitoba Health; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Syphilis; Treponema; Medicine; Congenital syphilis; Polymerase chain reaction; Internal medicine; Obstetrics; Immunology; Virology; Biology; Gene; Genetics; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005331232,0.0004308833,0.0002826392,0.002255642,0.001576749,0.0009626504,0.001011957,0.0003325221,0.001532929],"category_scores_gemma":[0.001601031,0.0003795788,0.0004183979,0.003439347,0.001015603,0.0004051657,0.0006176779,0.000604625,0.0003127684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01092077,"about_ca_system_score_gemma":0.01560986,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9234089,"about_ca_topic_score_gemma":0.9468209,"domain_scores_codex":[0.9991303,0.00004025444,0.00006639007,0.0001092293,0.0003612481,0.0002925986],"domain_scores_gemma":[0.9975317,0.0001136155,0.0005605592,0.00005086571,0.001152353,0.0005908349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002424578,0.00001301983,0.998378,0.00001340829,0.00001219337,0.0001090674,0.0001473039,0.00003620212,0.0001562869,0.00001209955,0.000401446,0.0006966577],"study_design_scores_gemma":[0.000002734387,0.00003468234,0.9972149,0.00002830355,0.00001445372,0.0003221524,0.001459106,0.0001384146,0.0001131158,0.00001014682,0.0006561644,0.000005832085],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899352,0.0009800066,0.0001450094,0.0002332854,0.00002219524,0.00008756966,0.005812739,0.00002392289,0.002760171],"genre_scores_gemma":[0.9958253,0.0007952812,0.0001561164,0.0001668713,0.00001197695,0.00002740136,0.002450248,0.000007329233,0.0005594672],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07659107,"threshold_uncertainty_score":0.1540842,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004806498495549514,"score_gpt":0.2107626080000987,"score_spread":0.2059561095045492,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}