{"id":"W4292838468","doi":"10.1128/mra.00619-22","title":"Near-Complete Genome Sequence of a SARS-CoV-2 Variant B.1.1.7 Virus Strain Isolated in Kazakhstan","year":2022,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences","funders":"Ministry of Education and Science of the Republic of Kazakhstan","keywords":"Virology; Strain (injury); Whole genome sequencing; Lineage (genetic); Coronavirus; Genome; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Sequence (biology); Biology; Coronavirus disease 2019 (COVID-19); Virus; Betacoronavirus; Genetics; Gene; Disease; Medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009973785,0.0003062949,0.0006671685,0.0004040279,0.0002540998,0.00002382556,0.0005951193,0.0001666834,0.0001199894],"category_scores_gemma":[0.00006475871,0.0003057712,0.0001448545,0.0009654158,0.0004451039,0.00005508005,0.000523604,0.0007855828,0.00008336035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000521631,"about_ca_system_score_gemma":0.0004662636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008739997,"about_ca_topic_score_gemma":0.0001214285,"domain_scores_codex":[0.9969516,0.0004384308,0.0007410909,0.000709436,0.0002891413,0.0008702861],"domain_scores_gemma":[0.998902,0.00007863719,0.0002223021,0.0006438988,0.0001173654,0.00003581524],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001398019,0.0004939658,0.008367135,0.00006754178,0.0001728545,0.0007236613,0.001360852,0.00001698487,0.9864619,0.00002620228,0.0006005497,0.0003103555],"study_design_scores_gemma":[0.003705913,0.001644151,0.0007007479,0.00005048873,0.00004130286,0.0006561512,0.0004643853,0.0005085308,0.02140495,0.00005744644,0.9704505,0.0003154459],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990977,0.0005033792,0.00008163908,0.0004080317,0.0001024187,0.0008853116,0.005677604,0.00005610456,0.001308498],"genre_scores_gemma":[0.9482554,0.000006678538,0.0002566266,0.04876554,0.00006292742,0.0001763395,0.002198377,0.00007141019,0.0002067244],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9698499,"threshold_uncertainty_score":0.9999394,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06851235557072173,"score_gpt":0.3339130922688986,"score_spread":0.2654007366981769,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}