{"id":"W4292879115","doi":"10.3390/jof8090896","title":"Whole Genome Sequencing Shows Genetic Diversity, as Well as Clonal Complex and Gene Polymorphisms Associated with Fluconazole Non-Susceptible Isolates of Candida tropicalis","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Medical Research Council; Medical Research Council; National University Health System; NSW Health Pathology; Royal College of Pathologists of Australasia","keywords":"Biology; Fluconazole; Candida tropicalis; Multilocus sequence typing; Genetics; Single-nucleotide polymorphism; Genetic diversity; Genetic variation; Whole genome sequencing; Genome; Gene; Genotype; Microbiology; Population; Antifungal","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003647612,0.000177699,0.0005987017,0.0001694054,0.0003374724,0.00001975091,0.0001918909,0.0000664967,0.003173522],"category_scores_gemma":[0.00005173946,0.0001473003,0.000173501,0.0002458176,0.0001519426,0.0001019013,0.0002526031,0.0004313814,0.00001294425],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003981031,"about_ca_system_score_gemma":0.0004695732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003516358,"about_ca_topic_score_gemma":0.0001277516,"domain_scores_codex":[0.9982027,0.00007643158,0.0005027397,0.0002142102,0.0007051226,0.000298735],"domain_scores_gemma":[0.9987175,0.0001018397,0.0004689648,0.0001864613,0.0002717806,0.0002533958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001188013,0.0001856887,0.3763423,0.0000381922,0.0003102201,0.0004709636,0.0006520667,0.0001557799,0.619799,0.00001051674,0.0005724129,0.0002748497],"study_design_scores_gemma":[0.003602614,0.005603884,0.9781335,0.0001100376,0.0005040162,0.0009513798,0.001623403,0.0004595452,0.007423246,0.0001748786,0.001165586,0.0002478964],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960852,0.001969627,0.0001099971,0.000355676,0.00007134661,0.0001816538,0.0001260611,0.000008873055,0.001091625],"genre_scores_gemma":[0.9970223,0.0001420362,0.0007608602,0.0004860679,0.0001017454,0.000001331629,0.00002530584,0.00001974926,0.001440569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6123757,"threshold_uncertainty_score":0.9977377,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01886746366459565,"score_gpt":0.23956637102579,"score_spread":0.2206989073611943,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}