{"id":"W4293104848","doi":"10.1093/ve/veac077","title":"A threat from both sides: Multiple introductions of genetically distinct H5 HPAI viruses into Canada via both East Asia-Australasia/Pacific and Atlantic flyways","year":2022,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":true,"ca_institutions":"Government of British Columbia; University of British Columbia; University of Manitoba; University of Saskatchewan; Ministry of Agriculture; Canadian Science Centre for Human and Animal Health","funders":"National Institute of Allergy and Infectious Diseases; U.S. Department of Health and Human Services; National Institutes of Health; Animal and Plant Health Agency; Canadian Food Inspection Agency; Canadian Wildlife Health Cooperative","keywords":"Influenza A virus subtype H5N1; Reassortment; Biology; Lineage (genetic); Phylogenetic tree; Zoology; Waterfowl; Virology; Geography; Virus; Ecology; Gene; Coronavirus disease 2019 (COVID-19); Genetics; Habitat","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000272054,0.0002914472,0.0005186746,0.0002267908,0.0007227119,0.0000230471,0.0001674182,0.00007260244,0.0003932022],"category_scores_gemma":[0.0006045945,0.000276289,0.00009658404,0.0004842687,0.0004202537,0.0001085599,0.0003178884,0.0004641384,0.0000136848],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001095062,"about_ca_system_score_gemma":0.0007358028,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6375094,"about_ca_topic_score_gemma":0.4082168,"domain_scores_codex":[0.9972302,0.0002061572,0.0005391869,0.0005846046,0.0009200676,0.0005198035],"domain_scores_gemma":[0.9986842,0.0002170313,0.0001519853,0.0005350007,0.0001744821,0.0002372435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001601694,0.0005853621,0.6811377,0.0002588742,0.0006790559,0.00007229487,0.00126548,0.0005337386,0.2947394,0.000452884,0.01445998,0.004213472],"study_design_scores_gemma":[0.003289528,0.00109333,0.9467042,0.0001191635,0.0004905712,0.00009316924,0.004119855,0.005765799,0.005848871,0.001149132,0.03072967,0.0005966819],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935672,0.002353907,0.001415863,0.0005956821,0.0003616397,0.000770576,0.0004751259,0.00008552852,0.0003745343],"genre_scores_gemma":[0.9978318,0.0001184847,0.001178462,0.00008394293,0.0003726722,0.0001455316,0.00009879825,0.00004125798,0.0001290147],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2888906,"threshold_uncertainty_score":0.9999689,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03183014675772269,"score_gpt":0.2834742345862876,"score_spread":0.2516440878285648,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}