{"id":"W4293246502","doi":"10.1101/2022.05.10.491101","title":"Transposable elements are associated with the variable response to influenza infection","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; McGill Genome Centre; McGill University","funders":"Canadian Institutes of Health Research; Ministry of Education, Culture, Sports, Science and Technology; Compute Canada; Genome Canada; McGill University","keywords":"Biology; Transcriptome; Innate immune system; Epigenetics; Immune system; Viral load; Immunology; Transposable element; Influenza A virus; Virus; Viral infection; Immunity; Virology; Gene expression profiling; Monocyte; Genetics; Genome; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002214506,0.0001640657,0.000232448,0.0002720908,0.0001232729,0.0002881995,0.0001311569,0.0002952368,0.001416496],"category_scores_gemma":[0.0005484484,0.0001115258,0.0002571778,0.0002846159,0.0001853819,0.0000957779,0.0002100471,0.0004179627,0.0002859282],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001065354,"about_ca_system_score_gemma":0.0000732135,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003709746,"about_ca_topic_score_gemma":0.0003670345,"domain_scores_codex":[0.9998286,0.00002430317,0.00001264014,0.0000661897,0.00003616976,0.00003216876],"domain_scores_gemma":[0.9994337,0.0001281916,0.0002645253,0.00005270604,0.00004093023,0.00007995628],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008764225,0.00004725544,0.2092369,0.0001196043,0.0001593492,0.0004046994,0.0002046914,0.0005020518,0.7783042,0.0004065697,0.0003953922,0.009342945],"study_design_scores_gemma":[0.00001246541,0.0001980674,0.9549749,0.00001339697,0.00007908582,0.001587606,0.0001441599,0.002298942,0.03875127,0.0006907201,0.001233402,0.00001593414],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99726,0.0004190292,0.00135475,0.00004697586,0.000008267805,0.000005723535,0.0005679525,0.0000332474,0.0003040135],"genre_scores_gemma":[0.9984932,0.00007234911,0.0005017031,0.00002842699,0.000009615558,0.000004967981,0.0005352597,0.000009328335,0.0003450173],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001416496,"threshold_uncertainty_score":0.004738688,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0157212649739488,"score_gpt":0.2410130058037211,"score_spread":0.2252917408297724,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}