{"id":"W4294001821","doi":"10.1016/j.ygeno.2022.110477","title":"Zebrafish Danio rerio myotomal muscle structure and growth from a spatial transcriptomics perspective","year":2022,"lang":"en","type":"article","venue":"Genomics","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Japan Society for the Promotion of Science; China Scholarship Council","keywords":"Biology; Danio; Myogenesis; Zebrafish; Transcriptome; Myocyte; Anatomy; Fish fin; Skeletal muscle; Muscle tissue; Cell biology; Gene expression; Gene; Fish <Actinopterygii>; Genetics; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008703019,0.000246131,0.000223455,0.00004745122,0.0003360696,0.00006076025,0.0003023553,0.0001969016,0.000124804],"category_scores_gemma":[0.00002063581,0.0002842354,0.0001160666,0.00007706269,0.0001081313,0.000006674566,0.0001777895,0.0003935453,0.000001471571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009637675,"about_ca_system_score_gemma":0.0001454474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0017117,"about_ca_topic_score_gemma":0.000735283,"domain_scores_codex":[0.9986068,0.00008523435,0.0002263374,0.0006169318,0.0001552263,0.0003094596],"domain_scores_gemma":[0.9994051,0.0000116596,0.00007890387,0.0003155198,0.00006889107,0.0001198897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003615505,0.00007864302,0.00490151,0.000008337849,0.0001044783,0.00001051617,0.001816954,0.000150102,0.9908062,0.0003803015,0.000429406,0.0009520064],"study_design_scores_gemma":[0.01212563,0.003150886,0.1366165,0.00001950026,0.0005086072,0.0002235769,0.01023544,0.004739538,0.6061701,0.01317944,0.2094889,0.003541902],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938368,0.0008055267,0.002398145,0.0002819238,0.0006219405,0.0002624406,0.001450356,0.00002770822,0.0003151686],"genre_scores_gemma":[0.996411,0.00013218,0.001242746,0.0009519317,0.0005508953,0.0000191673,0.0005467257,0.00006140704,0.00008391907],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.384636,"threshold_uncertainty_score":0.999961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006526030997793525,"score_gpt":0.1910073722242453,"score_spread":0.1844813412264517,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}