{"id":"W4294233683","doi":"10.3390/toxins14090603","title":"Genomic Analysis of Shiga Toxin-Producing E. coli O157 Cattle and Clinical Isolates from Alberta, Canada","year":2022,"lang":"en","type":"article","venue":"Toxins","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada; University of Alberta; University of Lethbridge; University of Calgary","funders":"Beef Cattle Research Council; Government of Canada; Agriculture Funding Consortium","keywords":"Biology; Virulence; Shiga toxin; Microbiology; Escherichia coli; STX2; Pathogen; Typing; Gene; Antibiotic resistance; Virology; Genetics; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002449251,0.0001027017,0.0002789132,0.00004579537,0.0001520112,0.0000088194,0.0002005721,0.00003875078,0.000165484],"category_scores_gemma":[0.0002485546,0.0001052829,0.00009413572,0.0002312122,0.00008750785,0.000001615556,0.0005737429,0.0001368892,6.630805e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005097807,"about_ca_system_score_gemma":0.0003692634,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5498782,"about_ca_topic_score_gemma":0.8515679,"domain_scores_codex":[0.9988725,0.0001311746,0.0002604158,0.0003848271,0.0001435414,0.0002076037],"domain_scores_gemma":[0.9992824,0.0001282051,0.00008951851,0.0003692062,0.00004551541,0.00008516692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001600298,0.0001488241,0.5765236,0.00001428002,0.003806295,0.000005194931,0.0003666349,0.001015278,0.4076971,0.00002314863,0.009437969,0.0008016379],"study_design_scores_gemma":[0.0005053183,0.0003515905,0.9447543,0.000002963732,0.0005220522,0.000001131409,0.0006645173,0.001354526,0.01568107,0.00001571861,0.03587787,0.0002689245],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975497,0.001216068,0.00001242643,0.0003663368,0.00009930746,0.0001057747,0.0002199831,0.000002945852,0.000427475],"genre_scores_gemma":[0.9979674,0.0002538878,0.0001575098,0.0003089997,0.00008536194,0.00001973805,0.0001317503,0.00001241639,0.001062964],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.392016,"threshold_uncertainty_score":0.4531191,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01585630730808363,"score_gpt":0.2846432475382296,"score_spread":0.2687869402301459,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}