{"id":"W4294233683","doi":"10.3390/toxins14090603","title":"Genomic Analysis of Shiga Toxin-Producing E. coli O157 Cattle and Clinical Isolates from Alberta, Canada","year":2022,"lang":"en","type":"article","venue":"Toxins","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada; University of Alberta; University of Lethbridge; University of Calgary","funders":"Beef Cattle Research Council; Government of Canada; Agriculture Funding Consortium","keywords":"Biology; Virulence; Shiga toxin; Microbiology; Escherichia coli; STX2; Pathogen; Typing; Gene; Antibiotic resistance; Virology; Genetics; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000280121,0.0003542907,0.0003798672,0.002546849,0.001458713,0.0009083006,0.0004422183,0.0002897619,0.001182435],"category_scores_gemma":[0.00072728,0.0002277537,0.0003024735,0.004371926,0.0004852275,0.00007490977,0.0003511288,0.0003198189,0.0003171306],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006196007,"about_ca_system_score_gemma":0.006683243,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8858137,"about_ca_topic_score_gemma":0.929436,"domain_scores_codex":[0.9994876,0.00001871268,0.0000212722,0.00008910531,0.0002524844,0.0001307397],"domain_scores_gemma":[0.9992278,0.00005725367,0.00005536878,0.0000142789,0.0005031181,0.0001422142],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0014275,0.000317624,0.7169044,0.0004020251,0.0001125344,0.003745202,0.00604102,0.00130084,0.2246045,0.0004469948,0.002286485,0.0424108],"study_design_scores_gemma":[0.00001504919,0.0001256742,0.9884956,0.00003476046,0.00002976128,0.0005410276,0.002560589,0.0004686176,0.002919625,0.00002223255,0.004776955,0.00001008677],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899954,0.0005849685,0.0003902452,0.00008988719,0.00001138334,0.00008354917,0.005677213,0.00001585204,0.003151491],"genre_scores_gemma":[0.9740399,0.001297199,0.002029578,0.0001678249,0.00001281973,0.00004678551,0.01751725,0.00001471478,0.004873946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1141863,"threshold_uncertainty_score":0.2297174,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01585630730808363,"score_gpt":0.2846432475382296,"score_spread":0.2687869402301459,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}