{"id":"W4294292674","doi":"10.22541/au.166201567.70620289/v1","title":"Regulation of Host Gene Expression by Gastrointestinal Tract Microbiota in Chinook Salmon (Oncorhynchus tshawytscha)","year":2022,"lang":"en","type":"preprint","venue":"","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Windsor","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Probiotic; Oncorhynchus; Microbiome; Transcriptome; Gene; Gene expression; Gut flora; Microbiology; Antibiotics; Gene expression profiling; Genetics; Immunology; Bacteria; Fish <Actinopterygii>; Fishery","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001147438,0.0001998627,0.0002029674,0.0002446579,0.0001646914,0.0002416481,0.00006446723,0.000182272,0.0004851889],"category_scores_gemma":[0.0001853293,0.00011985,0.0002554778,0.0002393032,0.0002071253,0.0001464637,0.0003055015,0.0002166955,0.0001114524],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002226805,"about_ca_system_score_gemma":0.0002728772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002879892,"about_ca_topic_score_gemma":0.006824249,"domain_scores_codex":[0.9998509,0.00001425689,0.00001286023,0.00005767535,0.00003422556,0.00003014248],"domain_scores_gemma":[0.9998652,0.00002286112,0.00004652625,0.000008916672,0.00003590767,0.00002072335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001415301,0.00001158079,0.01613425,0.0000634931,0.0000178007,0.00002598015,0.00006567222,0.0000416107,0.9813564,0.00001895318,0.00003932666,0.002083362],"study_design_scores_gemma":[0.000009526157,0.0003535624,0.9238298,0.00001308225,0.00007096703,0.0001064942,0.0003177804,0.0007914309,0.0735473,0.00005834545,0.0008850797,0.00001655899],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981439,0.0004331011,0.0004425056,0.00003548035,0.000007000901,0.000007001442,0.0006449979,0.0000120352,0.0002739339],"genre_scores_gemma":[0.9956425,0.0003972559,0.001241281,0.0001345497,0.000006257435,0.00004150582,0.001361839,0.00001378878,0.001160927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002879892,"threshold_uncertainty_score":0.005726337,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01026722197748936,"score_gpt":0.259504052618918,"score_spread":0.2492368306414287,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}