{"id":"W4294968711","doi":"10.1016/j.neuroimage.2022.119612","title":"Micapipe: A pipeline for multimodal neuroimaging and connectome analysis","year":2022,"lang":"en","type":"article","venue":"NeuroImage","topic":"Functional Brain Connectivity Studies","field":"Neuroscience","cited_by":123,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal; McGill University; Montreal Neurological Institute and Hospital","funders":"Centre Azrieli de recherche sur l'autisme, Institut et Hôpital Neurologiques de Montréal; National Institute of Mental Health; Ministry of Science, ICT and Future Planning; Fonds de Recherche du Québec - Santé; National Institute of Biomedical Imaging and Bioengineering; Canadian Institutes of Health Research; Canadian Open Neuroscience Platform; Health Canada; Natural Sciences and Engineering Research Council of Canada; Institute for Information and Communications Technology Promotion; Hospital for Sick Children; National Research Foundation of Korea; Inha University; Universidad Nacional Autónoma de México; Savoy Foundation; Universiteit Maastricht; National Research Foundation; Institute for Basic Science; Consejo Nacional de Ciencia y Tecnología; National Institutes of Health; Canada First Research Excellence Fund; Canada Research Chairs; McGill University; Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Ministry of Science and ICT, South Korea; Fondation Brain Canada","keywords":"Human Connectome Project; Connectome; Neuroimaging; Computer science; Tractography; Connectomics; Diffusion MRI; Artificial intelligence; Functional magnetic resonance imaging; Neuroscience; Pattern recognition (psychology); Functional connectivity; Psychology; Magnetic resonance imaging; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001819702,0.003961766,0.001550964,0.002605874,0.00144148,0.003967175,0.003316345,0.001431152,0.05670623],"category_scores_gemma":[0.007400849,0.001782197,0.003265161,0.002156661,0.0006761215,0.00238639,0.005451845,0.003390479,0.03815922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001001341,"about_ca_system_score_gemma":0.002351058,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007628068,"about_ca_topic_score_gemma":0.0157432,"domain_scores_codex":[0.9991491,0.0001092839,0.00007107088,0.0003305076,0.0002224973,0.0001175409],"domain_scores_gemma":[0.9987513,0.0004064156,0.00009379285,0.0003658131,0.0002787032,0.0001039143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008887641,0.0001215278,0.002999904,0.001618735,0.000929034,0.0007238192,0.0008259659,0.006819856,0.0228631,0.008430394,0.7503667,0.2034121],"study_design_scores_gemma":[0.0006896997,0.0002603758,0.0181855,0.0005118076,0.0004421244,0.001924714,0.0006489428,0.190871,0.06147625,0.1121508,0.6122386,0.0006001789],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"software","genre_gemma":"methods","genre_scores_codex":[0.006053133,0.0007766127,0.3904178,0.0006919256,0.0003189438,0.0005758881,0.07645759,0.5182727,0.006435458],"genre_scores_gemma":[0.05855632,0.001139789,0.5812218,0.001374492,0.0002210568,0.004408048,0.2008577,0.1390529,0.01316782],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.05670623,"threshold_uncertainty_score":0.1897013,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03613760562316639,"score_gpt":0.2831048872553093,"score_spread":0.2469672816321429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}