{"id":"W4295210917","doi":"10.3390/genes13091617","title":"Genotyping and In Silico Analysis of Delmarva (DMV/1639) Infectious Bronchitis Virus (IBV) Spike 1 (S1) Glycoprotein","year":2022,"lang":"en","type":"article","venue":"Genes","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Calgary","funders":"Egg Farmers of Canada; Agriculture and Agri-Food Canada; Canadian Poultry Research Council","keywords":"Biology; Hypervariable region; Gene; Virology; In silico; Avian infectious bronchitis; Infectious bronchitis virus; Avian infectious bronchitis virus; Genetics; Spike Protein; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002802551,0.0005554598,0.0003783509,0.0008441122,0.0003664611,0.0005040031,0.0003291125,0.0003457722,0.0008024372],"category_scores_gemma":[0.0005909827,0.0002017495,0.0006823911,0.0007253852,0.0001755305,0.0001055793,0.0001790126,0.0002711968,0.0005502347],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001034764,"about_ca_system_score_gemma":0.0008680261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06599867,"about_ca_topic_score_gemma":0.09286802,"domain_scores_codex":[0.9996691,0.00002972421,0.00001951277,0.00009264402,0.0001238067,0.00006516046],"domain_scores_gemma":[0.9998249,0.00005019625,0.00003516865,0.00001111897,0.00005033642,0.00002828463],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006249778,0.0001704416,0.1279151,0.0002610832,0.0001446787,0.0007706178,0.000375939,0.003502889,0.8482026,0.0001885567,0.0007399666,0.01710321],"study_design_scores_gemma":[0.00003754951,0.0004767024,0.6669329,0.0000625335,0.0003830689,0.00176912,0.00076427,0.03091887,0.2847803,0.0001894367,0.01362475,0.00006041991],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867913,0.0004250688,0.004225765,0.00008147166,0.00001875387,0.0001251667,0.006342717,0.000106497,0.001883373],"genre_scores_gemma":[0.9591419,0.0004763607,0.01649219,0.0001100278,0.000009194024,0.00005535286,0.02129601,0.00004859609,0.002370363],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06599867,"threshold_uncertainty_score":0.131229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01458625179394949,"score_gpt":0.2135097131897393,"score_spread":0.1989234613957898,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}