{"id":"W4295210917","doi":"10.3390/genes13091617","title":"Genotyping and In Silico Analysis of Delmarva (DMV/1639) Infectious Bronchitis Virus (IBV) Spike 1 (S1) Glycoprotein","year":2022,"lang":"en","type":"article","venue":"Genes","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Calgary","funders":"Egg Farmers of Canada; Agriculture and Agri-Food Canada; Canadian Poultry Research Council","keywords":"Biology; Hypervariable region; Gene; Virology; In silico; Avian infectious bronchitis; Infectious bronchitis virus; Avian infectious bronchitis virus; Genetics; Spike Protein; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001684412,0.0001129594,0.0002691355,0.00008872764,0.0003951604,0.00001804338,0.0001105234,0.00003653988,0.0008055542],"category_scores_gemma":[0.00003583146,0.00005745978,0.0001051212,0.001389868,0.00007769514,0.00005108241,0.0002859827,0.0001012026,0.000007315764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005261203,"about_ca_system_score_gemma":0.000005935163,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.009615014,"about_ca_topic_score_gemma":0.04362658,"domain_scores_codex":[0.9990625,0.00009619863,0.0002307182,0.0002626884,0.0001483516,0.0001995883],"domain_scores_gemma":[0.9996902,0.00009588964,0.00009505296,0.0000524217,0.00003303886,0.00003333745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004410151,0.0001068803,0.5205128,0.000007152085,0.0002066494,0.000005527705,0.000217275,0.001011182,0.3919398,0.0001462142,0.00005794915,0.08574443],"study_design_scores_gemma":[0.0001209484,0.0003284804,0.9794861,0.000004122284,0.0001400245,0.000008319467,0.0006068562,0.0003594184,0.006347122,0.0001504327,0.01225368,0.0001944842],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971101,0.001954991,0.000006755974,0.0001059537,0.00005978505,0.0001555607,0.00008585224,0.00003822185,0.0004827854],"genre_scores_gemma":[0.9993194,0.0003402661,0.00003543585,0.00008938371,0.00004845298,0.00006383905,0.00002161584,0.000001023725,0.00008058851],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4589733,"threshold_uncertainty_score":0.9969801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01458625179394949,"score_gpt":0.2135097131897393,"score_spread":0.1989234613957898,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}